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The map label for this gene is csrA

Identifier: 117919579

GI number: 117919579

Start: 1332240

End: 1332437

Strand: Direct

Name: csrA

Synonym: Shewana3_1130

Alternate gene names: 117919579

Gene position: 1332240-1332437 (Clockwise)

Preceding gene: 117919578

Following gene: 117919583

Centisome position: 26.79

GC content: 41.92

Gene sequence:

>198_bases
ATGCTGATTTTGACTCGTCGTGTTGGCGAAACACTGATGATTGGTGATGAAGTCACAGTTACAGTGCTAGGGGTAAAAGG
CAATCAAGTGCGTATTGGTGTTAATGCACCGAAAGAGGTTTCTGTCCACCGTGAAGAAATCTATCAACGCATTCAATCTG
AAAAATCAGGTACACCTTCAGAAGGTGGTAACTTTTAA

Upstream 100 bases:

>100_bases
ATTGAATACTATTAATTTGTACTCAGCTGACCCTATAATAAGCCCATCTACCGGATGAGTGCCGTGTGTAAGCTGAATTA
AGACATAAAGGAGCTATCGA

Downstream 100 bases:

>100_bases
TACGGCGCTTAGGCGAGTATTAGCGACATAGAAGAGTCAGTTTTTTAACTGGCTTTTTTATTTTTTGAACCGAAAGATTG
GCGCAAATCAACACATTGGA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQSEKSGTPSEGGNF

Sequences:

>Translated_65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQSEKSGTPSEGGNF
>Mature_65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQSEKSGTPSEGGNF

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=60, Percent_Identity=93.3333333333333, Blast_Score=110, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_SHEB2 (B8E8U6)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002357185.1
- ProteinModelPortal:   B8E8U6
- SMR:   B8E8U6
- GeneID:   7089815
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_1252
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   PRK01712
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 7125; Mature: 7125

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQSEKSGTPS
CEEEECCCCCEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
EGGNF
CCCCC
>Mature Secondary Structure
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQSEKSGTPS
CEEEECCCCCEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
EGGNF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA