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The map label for this gene is fdnI [C]

Identifier: 117919161

GI number: 117919161

Start: 824331

End: 825014

Strand: Reverse

Name: fdnI [C]

Synonym: Shewana3_0709

Alternate gene names: 117919161

Gene position: 825014-824331 (Counterclockwise)

Preceding gene: 117919162

Following gene: 117919160

Centisome position: 16.59

GC content: 48.83

Gene sequence:

>684_bases
ATGCATCAAGAACATGATATGAGACCCATTTTAAAACATCCGTTAAACGTCAGGATCTTCCACTACATTCTGCTACTGAG
CTTTTTGCCGTTAGCCGCTACAGGTTTGTTATTGTTTTTTAAACCGCTTTCCCAGGAAGGCATGCAGCTAACCTATGATG
TGCACATCATTGCGGGGATTATTATGGCCCTTGATGCCGTGGCATTTACCATCATGGCATTCGACCGAGTGGTGTTATTT
ATCGCCCGCGTGTTCAGCTTCTCCGAGCGCGACGTGAAATGGTTTATGGTGTTAGGCGGTTACCCACAGAAATTCTTACT
GGGTAAAAAAGTGCCTATCCCTCCGATGAACAAGTACAACTCGGGCCAAAAGCTGTTTGGTGCCTGCGTACTGATTGGCG
GCACAGTGCTTATCCTCTCAGGTTTAGTGCTGTGGCTTATCCCCCACGCCGCACCACGGGATATAGTGTGGTTTTTAGGT
CAAGCCCATTTAGTCTCTGGCCTAGTGTTAACCGCCTTCTTACCAGTGCATTTATTCCTCGCGGTGTACCGCTTCGATGA
CTTCAAAGCCATGATGATCCACGGCAATGTGCCCTACCATGATGCCGCCGAGTACACCCCGCTATGGGTAAAAAATGAAA
TAGCCCCCGTCGCCACGAACGGCGAACAACTGACCAGCAAATAG

Upstream 100 bases:

>100_bases
AAAGAATTCGGTGGCGAGCCTTTAGGACATATGTCCCATGAGCTACTGCACACCCACTTTGTCGACCGCACCAAATTAAG
CTCTTGATTGGAGATGAAAA

Downstream 100 bases:

>100_bases
CTAAGTCATCTGCGGCAGTTGCTCAACAACTGCCGCATTTCTGCATTCATATTCAAGGGCATAGATAACCATGAGCACAC
ACGAGCATCATTCCATTACC

Product: formate dehydrogenase subunit gamma

Products: CO2; NADH2 [C]

Alternate protein names: Formate Dehydrogenase Gamma Subunit; Formate Dehydrogenase Cytochrome B Subunit

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MHQEHDMRPILKHPLNVRIFHYILLLSFLPLAATGLLLFFKPLSQEGMQLTYDVHIIAGIIMALDAVAFTIMAFDRVVLF
IARVFSFSERDVKWFMVLGGYPQKFLLGKKVPIPPMNKYNSGQKLFGACVLIGGTVLILSGLVLWLIPHAAPRDIVWFLG
QAHLVSGLVLTAFLPVHLFLAVYRFDDFKAMMIHGNVPYHDAAEYTPLWVKNEIAPVATNGEQLTSK

Sequences:

>Translated_227_residues
MHQEHDMRPILKHPLNVRIFHYILLLSFLPLAATGLLLFFKPLSQEGMQLTYDVHIIAGIIMALDAVAFTIMAFDRVVLF
IARVFSFSERDVKWFMVLGGYPQKFLLGKKVPIPPMNKYNSGQKLFGACVLIGGTVLILSGLVLWLIPHAAPRDIVWFLG
QAHLVSGLVLTAFLPVHLFLAVYRFDDFKAMMIHGNVPYHDAAEYTPLWVKNEIAPVATNGEQLTSK
>Mature_227_residues
MHQEHDMRPILKHPLNVRIFHYILLLSFLPLAATGLLLFFKPLSQEGMQLTYDVHIIAGIIMALDAVAFTIMAFDRVVLF
IARVFSFSERDVKWFMVLGGYPQKFLLGKKVPIPPMNKYNSGQKLFGACVLIGGTVLILSGLVLWLIPHAAPRDIVWFLG
QAHLVSGLVLTAFLPVHLFLAVYRFDDFKAMMIHGNVPYHDAAEYTPLWVKNEIAPVATNGEQLTSK

Specific function: Formate Dehydrogenase Allows E. coli To Use Formate As Major Electron Donor During Anaerobic Respiration, When Nitrate Is Used As Electron Acceptor. Subunit Gamma Is The Cytochrome B556(Fdn) Component Of The Formate Dehydrogenase. [C]

COG id: COG2864

COG function: function code C; Cytochrome b subunit of formate dehydrogenase

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25557; Mature: 25557

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQEHDMRPILKHPLNVRIFHYILLLSFLPLAATGLLLFFKPLSQEGMQLTYDVHIIAGI
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
IMALDAVAFTIMAFDRVVLFIARVFSFSERDVKWFMVLGGYPQKFLLGKKVPIPPMNKYN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCCC
SGQKLFGACVLIGGTVLILSGLVLWLIPHAAPRDIVWFLGQAHLVSGLVLTAFLPVHLFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVYRFDDFKAMMIHGNVPYHDAAEYTPLWVKNEIAPVATNGEQLTSK
HHHHHCCCEEEEEECCCCCCCCCCCCCEEECCCCCCEECCCHHHCCC
>Mature Secondary Structure
MHQEHDMRPILKHPLNVRIFHYILLLSFLPLAATGLLLFFKPLSQEGMQLTYDVHIIAGI
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
IMALDAVAFTIMAFDRVVLFIARVFSFSERDVKWFMVLGGYPQKFLLGKKVPIPPMNKYN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCCC
SGQKLFGACVLIGGTVLILSGLVLWLIPHAAPRDIVWFLGQAHLVSGLVLTAFLPVHLFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVYRFDDFKAMMIHGNVPYHDAAEYTPLWVKNEIAPVATNGEQLTSK
HHHHHCCCEEEEEECCCCCCCCCCCCCEEECCCCCCEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD [C]

Specific reaction: formate + NAD = CO2 + NADH2 [C]

General reaction: Oxidoreductases; Acting on the aldehyde or oxo group of donor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA