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The map label for this gene is ycaD [H]

Identifier: 117919151

GI number: 117919151

Start: 815712

End: 817136

Strand: Reverse

Name: ycaD [H]

Synonym: Shewana3_0699

Alternate gene names: 117919151

Gene position: 817136-815712 (Counterclockwise)

Preceding gene: 117919152

Following gene: 117919142

Centisome position: 16.43

GC content: 52.84

Gene sequence:

>1425_bases
ATGGCAAATCCGCTACGCACTTTCGCCTCTTTATATAGCACGACTCTATTAACTGTGTTGGCAGGCGGTTTACTCACCAC
CTATTTAGGCCTGCGCCTGTCGGTGATGCACGTTCCACAGTTATGGATAGGCGGCATGATGTCGGCCTATTACGTCGGTC
TGGTGGCAGGCTCTAAGATAGGTCACCGTTTGATTGCCCAAGTCGGGCATATTCGCGCCTTTGTCGCCAGCGCAGGAATA
GTGGCCGCCTCCGCACTCGGCCACGCCTTAGTGGATGAGTTAGCGGTTTGGATCCTTTTAAGGCTTATCGTCGGTATGGG
CATGATGTGCCAATACATGGTGCTTGAAAGCTGGCTCAATGAGCAGGCCGAAAGCAGCCAACGCGGCATTGTGTTCGCCA
GCTACATGATAGTCTCGTATTTCGGTTTGATATTGGGCCAAGGTGCCATCAGCCTCTATCCTGAACTCGGCCTAGAGCCG
CTGTTACTGATCGCCATCTGTTTTGCCCTGTGTATTGTCCCCATTTCCTTGACCCGCCGTATTCACCCTGCGCCACTGGT
ACCCGCGCCCTTAAAAATCGCCCATTATTGGCGCAAAGCCCCGCAAGCACTGACGACTATTGCGATAGGTAGCATGATTG
TCGGCTCCTTTTACGGCTTGGCGCCCGCCTATGCGAGTAACTTAGGTTTACCACCCGAGAAAGTCGCCACCTATATGACG
GCCACCATTCTTGCGGGTCTGCTGGCGCAATGGCCGATGGGGAAATTATCCGACATTATGTCCCGCAGCCGGCTTATCCG
CATTAACTGCGTATTGCTTGGGATCTTAGCGTTAGCTATCGCCCTCACGCCTTACCACCCCACACTCTCACTGGTGATGA
CGTTTCTGTTCGGTATTCTTGGTTTTACCTTCTACCCTTTGGCGACGGCACTGGCCAACTCCCGTGTCGAGCAGAGCGAA
AGGGTCGGTCTGTCGGCCACCATATTACTGACCTTCGGTCTTGGCGCCAGTATAGGTCCGCTTATCGCCTCAACCCTAAT
GCAATGGCTCGGCAATAGCATGCTCTATGGCTTTATGTCGGCCTGTACCTTAATTCTGTTTTTACGCCTGCGTTATGTTC
ACTCACAACAAAAGGCCGAAACCAATGTGACTCAAGACTACATCATGGCAACCGGTGACTTAGTCTCATCCCCCTTGGCG
GCCGCGCTCGACCCAAGGGTTGATGTCGAATCGGTGCAGGAGCAAATGACCCCCACGCCCAGCGACGATGAAGAAGATTT
AGGTGCCGATGCCCTCGAGGATAATGACACTGACAGCGAACAACAGCTGACATTCGAGTTTGACGTTAATCCAGAGCCGA
CTTTTATTGAGGCAGAAACGAACGTTCTCGAAGAGTCAGATCTCGATACGGTGAAAACCGCTTAA

Upstream 100 bases:

>100_bases
ACAAAAATGATAACTCAGTCATTAAATCCCAACATATTGCAACACGGAATAAACACCAACTCCTGATATACTCTCCCTGC
AACCATACAAGGAGTAGTTA

Downstream 100 bases:

>100_bases
GGGGAATTTCAGTTATTCGAGACAATAAAAAAGACGGGCTAGCCCGTCTTTTTTATTGAAAGCTATCAATTAGCTACGGC
GTTGACGCACGGCTTCGAAT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MANPLRTFASLYSTTLLTVLAGGLLTTYLGLRLSVMHVPQLWIGGMMSAYYVGLVAGSKIGHRLIAQVGHIRAFVASAGI
VAASALGHALVDELAVWILLRLIVGMGMMCQYMVLESWLNEQAESSQRGIVFASYMIVSYFGLILGQGAISLYPELGLEP
LLLIAICFALCIVPISLTRRIHPAPLVPAPLKIAHYWRKAPQALTTIAIGSMIVGSFYGLAPAYASNLGLPPEKVATYMT
ATILAGLLAQWPMGKLSDIMSRSRLIRINCVLLGILALAIALTPYHPTLSLVMTFLFGILGFTFYPLATALANSRVEQSE
RVGLSATILLTFGLGASIGPLIASTLMQWLGNSMLYGFMSACTLILFLRLRYVHSQQKAETNVTQDYIMATGDLVSSPLA
AALDPRVDVESVQEQMTPTPSDDEEDLGADALEDNDTDSEQQLTFEFDVNPEPTFIEAETNVLEESDLDTVKTA

Sequences:

>Translated_474_residues
MANPLRTFASLYSTTLLTVLAGGLLTTYLGLRLSVMHVPQLWIGGMMSAYYVGLVAGSKIGHRLIAQVGHIRAFVASAGI
VAASALGHALVDELAVWILLRLIVGMGMMCQYMVLESWLNEQAESSQRGIVFASYMIVSYFGLILGQGAISLYPELGLEP
LLLIAICFALCIVPISLTRRIHPAPLVPAPLKIAHYWRKAPQALTTIAIGSMIVGSFYGLAPAYASNLGLPPEKVATYMT
ATILAGLLAQWPMGKLSDIMSRSRLIRINCVLLGILALAIALTPYHPTLSLVMTFLFGILGFTFYPLATALANSRVEQSE
RVGLSATILLTFGLGASIGPLIASTLMQWLGNSMLYGFMSACTLILFLRLRYVHSQQKAETNVTQDYIMATGDLVSSPLA
AALDPRVDVESVQEQMTPTPSDDEEDLGADALEDNDTDSEQQLTFEFDVNPEPTFIEAETNVLEESDLDTVKTA
>Mature_473_residues
ANPLRTFASLYSTTLLTVLAGGLLTTYLGLRLSVMHVPQLWIGGMMSAYYVGLVAGSKIGHRLIAQVGHIRAFVASAGIV
AASALGHALVDELAVWILLRLIVGMGMMCQYMVLESWLNEQAESSQRGIVFASYMIVSYFGLILGQGAISLYPELGLEPL
LLIAICFALCIVPISLTRRIHPAPLVPAPLKIAHYWRKAPQALTTIAIGSMIVGSFYGLAPAYASNLGLPPEKVATYMTA
TILAGLLAQWPMGKLSDIMSRSRLIRINCVLLGILALAIALTPYHPTLSLVMTFLFGILGFTFYPLATALANSRVEQSER
VGLSATILLTFGLGASIGPLIASTLMQWLGNSMLYGFMSACTLILFLRLRYVHSQQKAETNVTQDYIMATGDLVSSPLAA
ALDPRVDVESVQEQMTPTPSDDEEDLGADALEDNDTDSEQQLTFEFDVNPEPTFIEAETNVLEESDLDTVKTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=355, Percent_Identity=28.4507042253521, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 51228; Mature: 51096

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCHHHHHHCCCCHHCCC
>Mature Secondary Structure 
ANPLRTFASLYSTTLLTVLAGGLLTTYLGLRLSVMHVPQLWIGGMMSAYYVGLVAGSKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
GHRLIAQVGHIRAFVASAGIVAASALGHALVDELAVWILLRLIVGMGMMCQYMVLESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQAESSQRGIVFASYMIVSYFGLILGQGAISLYPELGLEPLLLIAICFALCIVPISLTRR
HHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHC
IHPAPLVPAPLKIAHYWRKAPQALTTIAIGSMIVGSFYGLAPAYASNLGLPPEKVATYMT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ATILAGLLAQWPMGKLSDIMSRSRLIRINCVLLGILALAIALTPYHPTLSLVMTFLFGIL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GFTFYPLATALANSRVEQSERVGLSATILLTFGLGASIGPLIASTLMQWLGNSMLYGFMS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ACTLILFLRLRYVHSQQKAETNVTQDYIMATGDLVSSPLAAALDPRVDVESVQEQMTPTP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCC
SDDEEDLGADALEDNDTDSEQQLTFEFDVNPEPTFIEAETNVLEESDLDTVKTA
CCCCHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA