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The map label for this gene is degQ [H]

Identifier: 117919142

GI number: 117919142

Start: 805950

End: 807302

Strand: Reverse

Name: degQ [H]

Synonym: Shewana3_0690

Alternate gene names: 117919142

Gene position: 807302-805950 (Counterclockwise)

Preceding gene: 117919151

Following gene: 117919141

Centisome position: 16.24

GC content: 52.25

Gene sequence:

>1353_bases
ATGAAAACGAAACTATCTGTACTTTCAGCCGCAATGTTAGCCGCAACTCTGACAATGATGCCCGCTGTCTCACAGGCCGC
TATTCCGCAATCTGTTGAGGGTCAATCCATTCCAAGTCTTGCGCCTATGTTAGAGCGCACGACGCCCGCCGTGGTTTCCG
TGGCGGTATCTGGCACGCACGTCTCCAAACAACGTGTACCCGATGTGTTCCGTTATTTCTTCGGCCCCAATGCACCGCAG
GAACAAGTGCAAGAACGTCCTTTTAGAGGCTTAGGCTCAGGTGTGATTATCGACGCAGATAAAGGTTATATCGTCACCAA
CAACCATGTGATCGACGGTGCCGATGATATCCAGGTCGGTCTGCACGATGGCCGCGAAGTCAAAGCCAAGCTGATTGGTA
CCGACTCAGAGTCCGACATTGCCTTGCTGCAAATTGAAGCGAAAAATCTAGTCGCGATCAAGACCTCTGATTCTGATGAA
CTACGTGTGGGTGACTTTGCAGTAGCCATCGGTAACCCCTTTGGTTTGGGTCAAACCGTCACCTCAGGGATCGTCAGCGC
CCTAGGCCGTAGCGGTTTAGGCATTGAAATGCTTGAAAACTTTATCCAAACCGACGCAGCGATTAACAGCGGCAACTCGG
GTGGTGCGCTGGTTAACCTGAAAGGTGAACTGATCGGTATTAACACCGCCATCGTAGCCCCAGGCGGTGGTAACGTAGGT
ATCGGTTTTGCGATCCCTGCCAATATGGTGAAAAACCTCGTGGCACAAATTGCCGAGCACGGTGAAGTTCGCCGTGGCGT
GCTGGGGATTTCGGGACGCGACTTGGATAGCCAACTCGCCCAAGGTTTTGGTTTAGATACCCAGCACGGTGGTTTTGTGA
ATGAAGTCACCGCGGGCAGCGCCGCTGAAAAAGCCGGCATCAAGGCGGGTGATATTATCGTCAGCGTCGATGGCCGTGCG
ATTAAATCCTTCCAAGAGCTACGTGCGAAAGTCGCGACTATGGGCGCGGGTGCCAAGGTTGAACTAGGACTTATCCGCGA
TGGCGATAAGAAAACCGTGAATGTCACCTTAGGTGAAGCAAGCCAAACCACTGAAAAAGCAGCAGGTGCTGTGCACCCAA
TGCTACAAGGTGCCTCGCTAGAAAACGCTTCGAAAGGGGTGGAAATTACTGAGGTGGCACAAGGCTCACCTGCGGCAATG
AGTGGCTTACAAAAAGGCGATGTGATTGTCGGCATTAACCGTTCGGCGGTGAAAGATCTGAAATCACTCAAGGAGCAGCT
CAAAGATCAAGAAGGCGCTGTCGCCCTGAAGATCCTCCGTGGTAAGAGCTTGTTGTACTTAGTGCTGCGTTAA

Upstream 100 bases:

>100_bases
AGGCAAATAGCCGGTACCGATACAGATTCGATCTGGTGCGGACACAACTCACGACGCATTACATCCAGATCCTTGATCCC
TTATTTGGAGTTATGAATAG

Downstream 100 bases:

>100_bases
TCGGTACGCCGCTCTGATCTTTATCCAATTATCAGATGCGGATCAGCATAGGGAACGCGGGTTCCCTATGCTTTAACTTG
TTAAACATGTTAATCTAACT

Product: peptidase Do

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MKTKLSVLSAAMLAATLTMMPAVSQAAIPQSVEGQSIPSLAPMLERTTPAVVSVAVSGTHVSKQRVPDVFRYFFGPNAPQ
EQVQERPFRGLGSGVIIDADKGYIVTNNHVIDGADDIQVGLHDGREVKAKLIGTDSESDIALLQIEAKNLVAIKTSDSDE
LRVGDFAVAIGNPFGLGQTVTSGIVSALGRSGLGIEMLENFIQTDAAINSGNSGGALVNLKGELIGINTAIVAPGGGNVG
IGFAIPANMVKNLVAQIAEHGEVRRGVLGISGRDLDSQLAQGFGLDTQHGGFVNEVTAGSAAEKAGIKAGDIIVSVDGRA
IKSFQELRAKVATMGAGAKVELGLIRDGDKKTVNVTLGEASQTTEKAAGAVHPMLQGASLENASKGVEITEVAQGSPAAM
SGLQKGDVIVGINRSAVKDLKSLKEQLKDQEGAVALKILRGKSLLYLVLR

Sequences:

>Translated_450_residues
MKTKLSVLSAAMLAATLTMMPAVSQAAIPQSVEGQSIPSLAPMLERTTPAVVSVAVSGTHVSKQRVPDVFRYFFGPNAPQ
EQVQERPFRGLGSGVIIDADKGYIVTNNHVIDGADDIQVGLHDGREVKAKLIGTDSESDIALLQIEAKNLVAIKTSDSDE
LRVGDFAVAIGNPFGLGQTVTSGIVSALGRSGLGIEMLENFIQTDAAINSGNSGGALVNLKGELIGINTAIVAPGGGNVG
IGFAIPANMVKNLVAQIAEHGEVRRGVLGISGRDLDSQLAQGFGLDTQHGGFVNEVTAGSAAEKAGIKAGDIIVSVDGRA
IKSFQELRAKVATMGAGAKVELGLIRDGDKKTVNVTLGEASQTTEKAAGAVHPMLQGASLENASKGVEITEVAQGSPAAM
SGLQKGDVIVGINRSAVKDLKSLKEQLKDQEGAVALKILRGKSLLYLVLR
>Mature_450_residues
MKTKLSVLSAAMLAATLTMMPAVSQAAIPQSVEGQSIPSLAPMLERTTPAVVSVAVSGTHVSKQRVPDVFRYFFGPNAPQ
EQVQERPFRGLGSGVIIDADKGYIVTNNHVIDGADDIQVGLHDGREVKAKLIGTDSESDIALLQIEAKNLVAIKTSDSDE
LRVGDFAVAIGNPFGLGQTVTSGIVSALGRSGLGIEMLENFIQTDAAINSGNSGGALVNLKGELIGINTAIVAPGGGNVG
IGFAIPANMVKNLVAQIAEHGEVRRGVLGISGRDLDSQLAQGFGLDTQHGGFVNEVTAGSAAEKAGIKAGDIIVSVDGRA
IKSFQELRAKVATMGAGAKVELGLIRDGDKKTVNVTLGEASQTTEKAAGAVHPMLQGASLENASKGVEITEVAQGSPAAM
SGLQKGDVIVGINRSAVKDLKSLKEQLKDQEGAVALKILRGKSLLYLVLR

Specific function: Protease with a shared specificity with degP [H]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PDZ (DHR) domains [H]

Homologues:

Organism=Homo sapiens, GI22129776, Length=312, Percent_Identity=35.2564102564103, Blast_Score=148, Evalue=9e-36,
Organism=Homo sapiens, GI4506141, Length=251, Percent_Identity=38.6454183266932, Blast_Score=146, Evalue=4e-35,
Organism=Homo sapiens, GI24308541, Length=299, Percent_Identity=32.4414715719064, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI7019477, Length=314, Percent_Identity=34.0764331210191, Blast_Score=140, Evalue=3e-33,
Organism=Escherichia coli, GI1789629, Length=458, Percent_Identity=54.585152838428, Blast_Score=471, Evalue=1e-134,
Organism=Escherichia coli, GI1786356, Length=440, Percent_Identity=55.2272727272727, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1789630, Length=333, Percent_Identity=42.3423423423423, Blast_Score=211, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24646839, Length=253, Percent_Identity=36.7588932806324, Blast_Score=137, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR009003
- InterPro:   IPR011782
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00595 PDZ; PF00089 Trypsin [H]

EC number: 3.4.21.-

Molecular weight: Translated: 46480; Mature: 46480

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKLSVLSAAMLAATLTMMPAVSQAAIPQSVEGQSIPSLAPMLERTTPAVVSVAVSGTH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCC
VSKQRVPDVFRYFFGPNAPQEQVQERPFRGLGSGVIIDADKGYIVTNNHVIDGADDIQVG
CCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEECCCCEEEECCEEECCCCCEEEE
LHDGREVKAKLIGTDSESDIALLQIEAKNLVAIKTSDSDELRVGDFAVAIGNPFGLGQTV
CCCCCEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEECEEEEEECCCCCCCHHH
TSGIVSALGRSGLGIEMLENFIQTDAAINSGNSGGALVNLKGELIGINTAIVAPGGGNVG
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEEEEECCCCCEE
IGFAIPANMVKNLVAQIAEHGEVRRGVLGISGRDLDSQLAQGFGLDTQHGGFVNEVTAGS
EEEECCHHHHHHHHHHHHHCCHHHHCEEECCCCCHHHHHHHCCCCCCCCCCCHHHCCCCC
AAEKAGIKAGDIIVSVDGRAIKSFQELRAKVATMGAGAKVELGLIRDGDKKTVNVTLGEA
CHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEECCC
SQTTEKAAGAVHPMLQGASLENASKGVEITEVAQGSPAAMSGLQKGDVIVGINRSAVKDL
CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCEEEECCHHHHHHH
KSLKEQLKDQEGAVALKILRGKSLLYLVLR
HHHHHHHCCCCCCEEEEEECCCCEEEEEEC
>Mature Secondary Structure
MKTKLSVLSAAMLAATLTMMPAVSQAAIPQSVEGQSIPSLAPMLERTTPAVVSVAVSGTH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCC
VSKQRVPDVFRYFFGPNAPQEQVQERPFRGLGSGVIIDADKGYIVTNNHVIDGADDIQVG
CCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEECCCCEEEECCEEECCCCCEEEE
LHDGREVKAKLIGTDSESDIALLQIEAKNLVAIKTSDSDELRVGDFAVAIGNPFGLGQTV
CCCCCEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEECEEEEEECCCCCCCHHH
TSGIVSALGRSGLGIEMLENFIQTDAAINSGNSGGALVNLKGELIGINTAIVAPGGGNVG
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEEEEECCCCCEE
IGFAIPANMVKNLVAQIAEHGEVRRGVLGISGRDLDSQLAQGFGLDTQHGGFVNEVTAGS
EEEECCHHHHHHHHHHHHHCCHHHHCEEECCCCCHHHHHHHCCCCCCCCCCCHHHCCCCC
AAEKAGIKAGDIIVSVDGRAIKSFQELRAKVATMGAGAKVELGLIRDGDKKTVNVTLGEA
CHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEECCC
SQTTEKAAGAVHPMLQGASLENASKGVEITEVAQGSPAAMSGLQKGDVIVGINRSAVKDL
CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCEEEECCHHHHHHH
KSLKEQLKDQEGAVALKILRGKSLLYLVLR
HHHHHHHCCCCCCEEEEEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8576051; 9278503 [H]