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The map label for this gene is 117919137

Identifier: 117919137

GI number: 117919137

Start: 802182

End: 802760

Strand: Reverse

Name: 117919137

Synonym: Shewana3_0685

Alternate gene names: NA

Gene position: 802760-802182 (Counterclockwise)

Preceding gene: 117919141

Following gene: 117919129

Centisome position: 16.14

GC content: 45.77

Gene sequence:

>579_bases
ATGGGCACAATCTCTAATGAGGGTCGTCAGCGGGTCATTGAAGCCGCCGCAATCATGCTTGCTTCAAGCGGTTTACGAGC
CATAAGCATTCGTGAAGTGGTCAAGTTTTCAGGTACTCCGCTTGGTTCCGCGTATCACAACTTCCCCGGAGGAAAACAGC
AGATAATTACTGAAGCCATTATTTGGGCAGGTACTCAAGCATCCGCGCAACTCAGTGCTTGTCTTGATAAAGATCGAAAC
AACGGCATTAATTTGTTTTTATCACTGTGGCGCCAACGTCTTGTTGGTTCACAATATCGTCATGGCTGTCCGATTGTTGC
AGCAGCGATAGAACTGCCAGAAGAGGATGAAGCTTCAGAAATAAAAGCGGCAGTAGCACGGGTATTCAGTGATTGGCAAT
CATTATTAGCTCAACACTTTGAGTCATTAGGTCACACAAAGGCCTCAGCCAATGCCATGGCACTTAGCATTATTGCCTGC
ATTGAAGGCGCGGTTGTAATGTGTCGGGGATACCAAAGCATTGAACCCTTCGATACTATTTTGGAATGTATTCCTAAATT
AGTTGAGAGGACTCTCTAA

Upstream 100 bases:

>100_bases
TAAAACGATGTTGAGATCATAGCGCTCACTAATTATAACGAGTGTCTTAATGTGTTTTTGATGCTAGCCTATAACAACTG
TTATAACAAGTGGGATTTTC

Downstream 100 bases:

>100_bases
CTTACTCTTACTTATTCCCCTGTCTTTTCAGCTGAATGAATACAATAAAAAAACCAGCACTTGGCTGGTTTTTTATTGGG
AGCGAATCCTACGCGAATGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MGTISNEGRQRVIEAAAIMLASSGLRAISIREVVKFSGTPLGSAYHNFPGGKQQIITEAIIWAGTQASAQLSACLDKDRN
NGINLFLSLWRQRLVGSQYRHGCPIVAAAIELPEEDEASEIKAAVARVFSDWQSLLAQHFESLGHTKASANAMALSIIAC
IEGAVVMCRGYQSIEPFDTILECIPKLVERTL

Sequences:

>Translated_192_residues
MGTISNEGRQRVIEAAAIMLASSGLRAISIREVVKFSGTPLGSAYHNFPGGKQQIITEAIIWAGTQASAQLSACLDKDRN
NGINLFLSLWRQRLVGSQYRHGCPIVAAAIELPEEDEASEIKAAVARVFSDWQSLLAQHFESLGHTKASANAMALSIIAC
IEGAVVMCRGYQSIEPFDTILECIPKLVERTL
>Mature_191_residues
GTISNEGRQRVIEAAAIMLASSGLRAISIREVVKFSGTPLGSAYHNFPGGKQQIITEAIIWAGTQASAQLSACLDKDRNN
GINLFLSLWRQRLVGSQYRHGCPIVAAAIELPEEDEASEIKAAVARVFSDWQSLLAQHFESLGHTKASANAMALSIIACI
EGAVVMCRGYQSIEPFDTILECIPKLVERTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20786; Mature: 20655

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTISNEGRQRVIEAAAIMLASSGLRAISIREVVKFSGTPLGSAYHNFPGGKQQIITEAI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHH
IWAGTQASAQLSACLDKDRNNGINLFLSLWRQRLVGSQYRHGCPIVAAAIELPEEDEASE
HHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHCCCCCHHHHHHCCCCCCCHHH
IKAAVARVFSDWQSLLAQHFESLGHTKASANAMALSIIACIEGAVVMCRGYQSIEPFDTI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LECIPKLVERTL
HHHHHHHHHHCC
>Mature Secondary Structure 
GTISNEGRQRVIEAAAIMLASSGLRAISIREVVKFSGTPLGSAYHNFPGGKQQIITEAI
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHH
IWAGTQASAQLSACLDKDRNNGINLFLSLWRQRLVGSQYRHGCPIVAAAIELPEEDEASE
HHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHCCCCCHHHHHHCCCCCCCHHH
IKAAVARVFSDWQSLLAQHFESLGHTKASANAMALSIIACIEGAVVMCRGYQSIEPFDTI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LECIPKLVERTL
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]