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The map label for this gene is kdsD [H]

Identifier: 117919129

GI number: 117919129

Start: 795919

End: 796896

Strand: Reverse

Name: kdsD [H]

Synonym: Shewana3_0677

Alternate gene names: 117919129

Gene position: 796896-795919 (Counterclockwise)

Preceding gene: 117919137

Following gene: 117919128

Centisome position: 16.03

GC content: 50.82

Gene sequence:

>978_bases
ATGGTAGACCAATCACAATTGCGCCAGTGGGGCTGTAAAGTCATCGATATTGAAAAATCGGCCCTCGACAATCTTTATCA
ATATGTCGATTCCGTTGAATTTGCCCAAGCCTGCGAGTTAATTCTCAACTGCACCGGCAAAGTGATAGTGATGGGGATGG
GGAAATCAGGCCACATTGGCAATAAAATCTCGGCCACCCTCGCCAGCACAGGCACCCCAGCGTTTTTTGTCCACCCCGGC
GAAGCCAGCCATGGTGACCTAGGCGTGCTTTCGGACAATGATGTAATTCTTGCGATTTCAAACTCGGGCGAGTCGAGCGA
AATCCTCGCGCTGATGCCGGTCATTCAACGTAAAGCCATTCCCGTGATTGCCATGACAGGCAAGCCAGAATCCACCATGG
CGCGTCTCTCTAAAATTCATTTATGTATTGAGGTGCCAGAGGAAGCCTGTCCGCTTGGGCTGGCGCCAACTTCAAGCACC
ACGGCAACCTTAGTCATGGGCGATGCCATCGCCATTGCGCTGCTGCAAGCTAAAGGCTTTACCCGGGAAGATTTCGCCAT
GTCCCATCCGGGCGGCGCCTTAGGTCGTAAGCTGCTGCTAAAAGTCAGCAACGTGATGCACAGCGGTGATGATTTACCTT
TGGTTAAACACGATATCTGCATTACCGATGCCCTGTATGAGATCTCCAAGAAAGGCTTGGGCATGACTGCGGTTATCGAT
GAGCAAAACAAACTCGTGGGTATCTTTACCGACGGCGATCTGCGCCGGGTTATCGACGCCCAAGTCAACCTTCGCACTAC
GCCGATTGCCGATGTGATGACGCGAAACTGTGTCACAATTACTGAAAACGTTTTAGCGGCGCAGGCGCTGCAAGTGATGG
ATTCCAAAAATATCAACGGCCTGATAGTGATAGATAAAGAACATCATCCTGTCGGAGCCCTCAATATGCTCGATATGGTT
AAAGCGGGAGTGATTTAA

Upstream 100 bases:

>100_bases
AGTAAGAAGCCGTTAATTTTATCATCTTTATCGCGTACCAAATTGTGCTATTCCAATCCCAGAACGGGGCGACAAAGACA
ATGCAAGAAGAGAGATAGAC

Downstream 100 bases:

>100_bases
TGCCACAGCAAGGTTTTTACGGCCCCATCAGCGACGATGTTTGGCAAAGGGCGCAAAAAATTAAACTGCTGATCTGCGAT
GTGGACGGAGTGTTTTCCGA

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MVDQSQLRQWGCKVIDIEKSALDNLYQYVDSVEFAQACELILNCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSDNDVILAISNSGESSEILALMPVIQRKAIPVIAMTGKPESTMARLSKIHLCIEVPEEACPLGLAPTSST
TATLVMGDAIAIALLQAKGFTREDFAMSHPGGALGRKLLLKVSNVMHSGDDLPLVKHDICITDALYEISKKGLGMTAVID
EQNKLVGIFTDGDLRRVIDAQVNLRTTPIADVMTRNCVTITENVLAAQALQVMDSKNINGLIVIDKEHHPVGALNMLDMV
KAGVI

Sequences:

>Translated_325_residues
MVDQSQLRQWGCKVIDIEKSALDNLYQYVDSVEFAQACELILNCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSDNDVILAISNSGESSEILALMPVIQRKAIPVIAMTGKPESTMARLSKIHLCIEVPEEACPLGLAPTSST
TATLVMGDAIAIALLQAKGFTREDFAMSHPGGALGRKLLLKVSNVMHSGDDLPLVKHDICITDALYEISKKGLGMTAVID
EQNKLVGIFTDGDLRRVIDAQVNLRTTPIADVMTRNCVTITENVLAAQALQVMDSKNINGLIVIDKEHHPVGALNMLDMV
KAGVI
>Mature_325_residues
MVDQSQLRQWGCKVIDIEKSALDNLYQYVDSVEFAQACELILNCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSDNDVILAISNSGESSEILALMPVIQRKAIPVIAMTGKPESTMARLSKIHLCIEVPEEACPLGLAPTSST
TATLVMGDAIAIALLQAKGFTREDFAMSHPGGALGRKLLLKVSNVMHSGDDLPLVKHDICITDALYEISKKGLGMTAVID
EQNKLVGIFTDGDLRRVIDAQVNLRTTPIADVMTRNCVTITENVLAAQALQVMDSKNINGLIVIDKEHHPVGALNMLDMV
KAGVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=319, Percent_Identity=57.6802507836991, Blast_Score=386, Evalue=1e-108,
Organism=Escherichia coli, GI87082151, Length=293, Percent_Identity=49.1467576791809, Blast_Score=280, Evalue=7e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34652; Mature: 34652

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDQSQLRQWGCKVIDIEKSALDNLYQYVDSVEFAQACELILNCTGKVIVMGMGKSGHIG
CCCHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
NKISATLASTGTPAFFVHPGEASHGDLGVLSDNDVILAISNSGESSEILALMPVIQRKAI
CCEEEEEECCCCCEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCC
PVIAMTGKPESTMARLSKIHLCIEVPEEACPLGLAPTSSTTATLVMGDAIAIALLQAKGF
CEEEECCCCHHHHHHHHHEEEEEECCHHHCCCCCCCCCCCEEEEEECCHHEEEEHHHCCC
TREDFAMSHPGGALGRKLLLKVSNVMHSGDDLPLVKHDICITDALYEISKKGLGMTAVID
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCEEEEEE
EQNKLVGIFTDGDLRRVIDAQVNLRTTPIADVMTRNCVTITENVLAAQALQVMDSKNING
CCCCEEEEEECCCHHHHHHCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
LIVIDKEHHPVGALNMLDMVKAGVI
EEEEECCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MVDQSQLRQWGCKVIDIEKSALDNLYQYVDSVEFAQACELILNCTGKVIVMGMGKSGHIG
CCCHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
NKISATLASTGTPAFFVHPGEASHGDLGVLSDNDVILAISNSGESSEILALMPVIQRKAI
CCEEEEEECCCCCEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCC
PVIAMTGKPESTMARLSKIHLCIEVPEEACPLGLAPTSSTTATLVMGDAIAIALLQAKGF
CEEEECCCCHHHHHHHHHEEEEEECCHHHCCCCCCCCCCCEEEEEECCHHEEEEHHHCCC
TREDFAMSHPGGALGRKLLLKVSNVMHSGDDLPLVKHDICITDALYEISKKGLGMTAVID
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCEEEEEE
EQNKLVGIFTDGDLRRVIDAQVNLRTTPIADVMTRNCVTITENVLAAQALQVMDSKNING
CCCCEEEEEECCCHHHHHHCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
LIVIDKEHHPVGALNMLDMVKAGVI
EEEEECCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]