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The map label for this gene is bepC [H]

Identifier: 117918836

GI number: 117918836

Start: 420327

End: 421742

Strand: Reverse

Name: bepC [H]

Synonym: Shewana3_0379

Alternate gene names: 117918836

Gene position: 421742-420327 (Counterclockwise)

Preceding gene: 117918837

Following gene: 117918835

Centisome position: 8.48

GC content: 46.89

Gene sequence:

>1416_bases
ATGAAGACTTTAGTAAGACGACAATTTCAATGTTCAAAAATAGCTGTGTTGTTATCAGCTATCTTGCTTCCACTATCAGC
TCAAAGCCAAACGTTAGAGCAAGCGGTTGCGCATACACTCGATACCAACCCAGATCTACGTGTGGCTTTTAATCGCTTTA
AAGCTAGAGAAGAGCAAGTGAATCAAGCTATTGCTGGTTATATGCCTACAGTAGATATCACTGGTGGTTATGGCTATGAG
CAAACCGATAGTGTCTCAACCCGCAGACGCAAAAATGTCGGCGATGTTGATAGCAATGGTGTTGCTGAGCTAAACCGTGG
TGAATTTGGTATTAGCCTTAAACAAATGCTATTCGATGGTTTTTATACCAGCAGTGAAGTTGACCGTTATAGCTTTGAAG
CCAGTGCAGACCAGTGGGCGCTTCTTGCCGCAGCAGAAGACATGGCACTTGATGTCAGTAAGGTCTACCTCAACTATCTG
CGCACCGATGAGGTGCTCAAATTGGCTGAGAAAAACCTCAACAGCCACAAAGATATTTATGAGCAAATCAAACAACGTAC
CGATTCAGGTTTAGGCTCGACTGCGGATCTCTCACAAATTACCGGTCGTCTCGCCCGTGCCAATGCGAACGTCATTTCTG
CACGTAATAATCTACTCGATGCCAAAGCACAATTTATTCGTGTGATCGCGGCTGATCCTGTTGATTTGATCCAACCCGTA
CCGGATGCAGATTTACTGCCGAAAGATCTTAACTCGGGCCTTACCGACGCGCAGGAAAACCACCCGATTTTAAAATCCGC
AGCCAATGATATTCGCGCCGCCGAGAACGAACGTTCGTCGGTGCAAGCAAGTTATTATCCACAAGTCTCGTTAGAGTTAA
ATGGTAACTGGAACAACGATGTGGGCGGTGAAGACGGCGTTAGCGCGTTAGCCAGCCAAAACGTTGGCGGTTACAACAAC
GATCTGGTTGCTATGGTGAGAGTGAGATACAACCTGTTCGCTGGCGGTAAAGATCTCGCCCGCGAAAAAGAAACAGCCTA
CAAGTTAGGTGAGGCCAAAGAAATCCGTCAACGCGCGCAGCGTGAAGTGGTTGAAGGCGTGAACTTAGCGTGGAACGCCT
ATGAAATGCTGGCCCCACAGAAACAATATATCCGCGACCATGTGATGGCTGCAAAAGATACCCAATCTGCCTACGCCCAA
CAGTTTAACTTGGGTCAACGCAGTTTACTCGACTTACTCGATACCGAAAACGAGCTGTTTGAGGCACGTAAAGATTACTT
ACAAGCCGAATACGATGAAATCATTGCTAAATATCGCGTACTCAACTCTACTGGACGTTTGCTTGACTCCTTAAAAGTCA
CTCGCCCAGAAGCATGGCGTGGTGAACGCAACTACGAGGGAGGAGCTAACCAATGA

Upstream 100 bases:

>100_bases
GACAAAGATCCATTCTTGAGTACATTTTAAATCCAATTTTAAGGGCTAAGGACACAGCGCTCAGAGAGCGTTAAGCCTGT
TATAAACCGGGAGGTTTGCA

Downstream 100 bases:

>100_bases
AAACCGTAATCCTATTTATGAGCGTGGCACTTTTAGCTGGTTGTTCCATGCGGGATACCGTTAATATTGAAGAAATGACC
ACGACTCAGGCCTATGATCT

Product: TolC family type I secretion outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MKTLVRRQFQCSKIAVLLSAILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDITGGYGYE
QTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDGFYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYL
RTDEVLKLAEKNLNSHKDIYEQIKQRTDSGLGSTADLSQITGRLARANANVISARNNLLDAKAQFIRVIAADPVDLIQPV
PDADLLPKDLNSGLTDAQENHPILKSAANDIRAAENERSSVQASYYPQVSLELNGNWNNDVGGEDGVSALASQNVGGYNN
DLVAMVRVRYNLFAGGKDLAREKETAYKLGEAKEIRQRAQREVVEGVNLAWNAYEMLAPQKQYIRDHVMAAKDTQSAYAQ
QFNLGQRSLLDLLDTENELFEARKDYLQAEYDEIIAKYRVLNSTGRLLDSLKVTRPEAWRGERNYEGGANQ

Sequences:

>Translated_471_residues
MKTLVRRQFQCSKIAVLLSAILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDITGGYGYE
QTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDGFYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYL
RTDEVLKLAEKNLNSHKDIYEQIKQRTDSGLGSTADLSQITGRLARANANVISARNNLLDAKAQFIRVIAADPVDLIQPV
PDADLLPKDLNSGLTDAQENHPILKSAANDIRAAENERSSVQASYYPQVSLELNGNWNNDVGGEDGVSALASQNVGGYNN
DLVAMVRVRYNLFAGGKDLAREKETAYKLGEAKEIRQRAQREVVEGVNLAWNAYEMLAPQKQYIRDHVMAAKDTQSAYAQ
QFNLGQRSLLDLLDTENELFEARKDYLQAEYDEIIAKYRVLNSTGRLLDSLKVTRPEAWRGERNYEGGANQ
>Mature_471_residues
MKTLVRRQFQCSKIAVLLSAILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDITGGYGYE
QTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDGFYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYL
RTDEVLKLAEKNLNSHKDIYEQIKQRTDSGLGSTADLSQITGRLARANANVISARNNLLDAKAQFIRVIAADPVDLIQPV
PDADLLPKDLNSGLTDAQENHPILKSAANDIRAAENERSSVQASYYPQVSLELNGNWNNDVGGEDGVSALASQNVGGYNN
DLVAMVRVRYNLFAGGKDLAREKETAYKLGEAKEIRQRAQREVVEGVNLAWNAYEMLAPQKQYIRDHVMAAKDTQSAYAQ
QFNLGQRSLLDLLDTENELFEARKDYLQAEYDEIIAKYRVLNSTGRLLDSLKVTRPEAWRGERNYEGGANQ

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

None

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 52463; Mature: 52463

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLVRRQFQCSKIAVLLSAILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQV
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NQAIAGYMPTVDITGGYGYEQTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDG
HHHHHCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYLRTDEVLKLAEKNLNSHKDIY
CCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
EQIKQRTDSGLGSTADLSQITGRLARANANVISARNNLLDAKAQFIRVIAADPVDLIQPV
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
PDADLLPKDLNSGLTDAQENHPILKSAANDIRAAENERSSVQASYYPQVSLELNGNWNND
CCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCEEEECCEEEEEECCCCCCC
VGGEDGVSALASQNVGGYNNDLVAMVRVRYNLFAGGKDLAREKETAYKLGEAKEIRQRAQ
CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
REVVEGVNLAWNAYEMLAPQKQYIRDHVMAAKDTQSAYAQQFNLGQRSLLDLLDTENELF
HHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH
EARKDYLQAEYDEIIAKYRVLNSTGRLLDSLKVTRPEAWRGERNYEGGANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKTLVRRQFQCSKIAVLLSAILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQV
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NQAIAGYMPTVDITGGYGYEQTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDG
HHHHHCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYLRTDEVLKLAEKNLNSHKDIY
CCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
EQIKQRTDSGLGSTADLSQITGRLARANANVISARNNLLDAKAQFIRVIAADPVDLIQPV
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
PDADLLPKDLNSGLTDAQENHPILKSAANDIRAAENERSSVQASYYPQVSLELNGNWNND
CCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCEEEECCEEEEEECCCCCCC
VGGEDGVSALASQNVGGYNNDLVAMVRVRYNLFAGGKDLAREKETAYKLGEAKEIRQRAQ
CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
REVVEGVNLAWNAYEMLAPQKQYIRDHVMAAKDTQSAYAQQFNLGQRSLLDLLDTENELF
HHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH
EARKDYLQAEYDEIIAKYRVLNSTGRLLDSLKVTRPEAWRGERNYEGGANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]