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The map label for this gene is rbpD [H]

Identifier: 117918639

GI number: 117918639

Start: 214781

End: 215245

Strand: Reverse

Name: rbpD [H]

Synonym: Shewana3_0181

Alternate gene names: 117918639

Gene position: 215245-214781 (Counterclockwise)

Preceding gene: 117918642

Following gene: 117918637

Centisome position: 4.33

GC content: 45.38

Gene sequence:

>465_bases
ATGCAAAAGTCATTTCTTATTGTTTTGGTTATTGCCATTCTCGGCGCAATCGCGCTATCTCAATTTGCAACTACATTACC
TGCGTACATCGCTTTTGTTGCTGGCGTTATCATTACTACTCTCGTTTTTAAATTTGTCCCAGAGACAAACCAAGCTCAAG
GTGCAGATGAGCAATATGTTGGCCCGACCATGACACTCTATGTAGGCAACTTGCCTTATCGTGTCCATGAGGGTGAAGTG
AAGGTTCTGTTTGGTGAGTTCGGCCCCGTCAACTCAGTACGTTTAGTACGTGATCGTAAAACGGGTCGTCGTAAAGGGTT
TGGCTTTGTGGAAATGTCCGAGGCGGGAGCTCAAAAGGCGATGGTCAAGTTGAACGATTTCAACTTCCAAGAAAGAACCT
TAAAGGTTAGAGAAGCGAAGACTCAAGATTCGGAAGCTGCCGACCGTACAGGTACCGATGAATAA

Upstream 100 bases:

>100_bases
TTTTCGGCAGCGGTCTAGTGTAAAAGTAAATAATTCATTACCATATGACTTGCTGTTAACAGTTATTTATCATTTTCTAT
TTCATTCAGAGAGCATTTAT

Downstream 100 bases:

>100_bases
TCCGCGTTAATTTATCCGTTTGAGTTGATTGTGGTGATTCGCTCTAGGGTTGAAAAGCCACAATCGACTAACGTGGTCGC
TAATCCCTCACTGATTTCTG

Product: RNP-1-like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MQKSFLIVLVIAILGAIALSQFATTLPAYIAFVAGVIITTLVFKFVPETNQAQGADEQYVGPTMTLYVGNLPYRVHEGEV
KVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKAMVKLNDFNFQERTLKVREAKTQDSEAADRTGTDE

Sequences:

>Translated_154_residues
MQKSFLIVLVIAILGAIALSQFATTLPAYIAFVAGVIITTLVFKFVPETNQAQGADEQYVGPTMTLYVGNLPYRVHEGEV
KVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKAMVKLNDFNFQERTLKVREAKTQDSEAADRTGTDE
>Mature_154_residues
MQKSFLIVLVIAILGAIALSQFATTLPAYIAFVAGVIITTLVFKFVPETNQAQGADEQYVGPTMTLYVGNLPYRVHEGEV
KVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKAMVKLNDFNFQERTLKVREAKTQDSEAADRTGTDE

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=82, Percent_Identity=42.6829268292683, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI35493811, Length=104, Percent_Identity=36.5384615384615, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=41.4634146341463, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI4757926, Length=105, Percent_Identity=36.1904761904762, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=50, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=42.3076923076923, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=40.2439024390244, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17137710, Length=81, Percent_Identity=44.4444444444444, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582417, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45550943, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582419, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582423, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582421, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19920866, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582412, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 16995; Mature: 16995

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSFLIVLVIAILGAIALSQFATTLPAYIAFVAGVIITTLVFKFVPETNQAQGADEQYV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
GPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKA
CCEEEEEECCCCEEEECCCEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCCHHH
MVKLNDFNFQERTLKVREAKTQDSEAADRTGTDE
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQKSFLIVLVIAILGAIALSQFATTLPAYIAFVAGVIITTLVFKFVPETNQAQGADEQYV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
GPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKA
CCEEEEEECCCCEEEECCCEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCCHHH
MVKLNDFNFQERTLKVREAKTQDSEAADRTGTDE
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]