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The map label for this gene is selU [H]

Identifier: 117918633

GI number: 117918633

Start: 208523

End: 209620

Strand: Reverse

Name: selU [H]

Synonym: Shewana3_0175

Alternate gene names: 117918633

Gene position: 209620-208523 (Counterclockwise)

Preceding gene: 117918634

Following gene: 117918620

Centisome position: 4.22

GC content: 47.91

Gene sequence:

>1098_bases
ATGACAACTAAGCTCATCCCCGCCCAGCAATATCACGATATCTTTATCGCTGGGCAGCCATTAATCGACTTAAGGGCGCC
AATCGAGTTTGACCGCGGCGCTTTTCCTTCCTCGGTAAATCTGCCGTTAATGGTTGATAAGGAAAGGGAAAAGGTCGGCA
CTTGCTACAAAGCGCAAGGACAGCAAGCCGCGATAGCCTTGGGCCATTCCCTCGTGCATGGCGTGGTAAAACAGCAGCGT
ATTGATGCTTGGTTAAACTTTTTATCTGCAAACCCAGAAGCTTATCTTTACTGCTTTCGCGGCGGGCTACGCTCACAATT
AACTCAGCAATGGCTGCAAGAGGCAGGCGTTACCGCGCCTTATGTACAGGGCGGCTACAAAGGCATGCGCCAATATTTAA
TTGGTGTCATTGAGACGGCGCCAAGTCAGCAACCTTTGCTAAGCCTGAGCGGTATGACGGGAAGCGGTAAAACCGATTTT
TTAAGACTGCGTAAAGAAGCAATCGATCTCGAAGGCATTGCCAATCACAGAGGCTCGAGCTTTGGTAAAAACATCGACCC
ACAACCGACACAAATTAACTTTGAAAATCAGCTCGCCATTGCCCTGCTTCGGCATCAATTAGGCAATCACGCCTGTTTGT
TGCTCGAGGATGAAAGCTTTTTGATTGGCCGCTCGGCGCTGCCGCAAAGCTTTTATAGCGCAATGCAGACGGCCGATATT
GTGGTACTCGAAGAAGACGATGACATCAGGCTAACTCGTTTACTCGATGAATACGTTCATAAAATGCATCTAGGATTTAG
CGAACGTCTCGGCTTAGAGGCAGGTTTCGAAGCCTTTAGCCACTACCTATTACAGAGTCTTGGCAGCATTCGCAAACGTC
TTGGCGGTAAGCAATATCAAGAGTTGCAAGACATGATGCAACAAGCACTGTCGCAGCAACTCAATCAAAACCAAACCTCA
CAACATATGGCCTGGATAAGCCTGCTACTGCACAAGTATTACGACCCCATGTACGAATACCAATTGCAAAAGAAAGCCGG
CAATATTCTGTTTAGGGGAAGTCACCAAGCCATGCATGAGTGGCTGGATAACTATTAA

Upstream 100 bases:

>100_bases
AAGCGGAACTGGTGGCGCTACTTAATGCCCATCAAATTGAGCCTATCTGTATTGGCTCGCTAGAAACGCCCACCTCCACC
GCCAATGTGGTGCTGTGTTA

Downstream 100 bases:

>100_bases
TAAAAATAGAAAATACACCGCCGCACAATGGCGTACAGCGGTGCTTTTCCTGCAAAACTAATACGTTGAAATAGTGATAT
CTTCGTAGTCGTAATTGTCA

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase [H]

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MTTKLIPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVGTCYKAQGQQAAIALGHSLVHGVVKQQR
IDAWLNFLSANPEAYLYCFRGGLRSQLTQQWLQEAGVTAPYVQGGYKGMRQYLIGVIETAPSQQPLLSLSGMTGSGKTDF
LRLRKEAIDLEGIANHRGSSFGKNIDPQPTQINFENQLAIALLRHQLGNHACLLLEDESFLIGRSALPQSFYSAMQTADI
VVLEEDDDIRLTRLLDEYVHKMHLGFSERLGLEAGFEAFSHYLLQSLGSIRKRLGGKQYQELQDMMQQALSQQLNQNQTS
QHMAWISLLLHKYYDPMYEYQLQKKAGNILFRGSHQAMHEWLDNY

Sequences:

>Translated_365_residues
MTTKLIPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVGTCYKAQGQQAAIALGHSLVHGVVKQQR
IDAWLNFLSANPEAYLYCFRGGLRSQLTQQWLQEAGVTAPYVQGGYKGMRQYLIGVIETAPSQQPLLSLSGMTGSGKTDF
LRLRKEAIDLEGIANHRGSSFGKNIDPQPTQINFENQLAIALLRHQLGNHACLLLEDESFLIGRSALPQSFYSAMQTADI
VVLEEDDDIRLTRLLDEYVHKMHLGFSERLGLEAGFEAFSHYLLQSLGSIRKRLGGKQYQELQDMMQQALSQQLNQNQTS
QHMAWISLLLHKYYDPMYEYQLQKKAGNILFRGSHQAMHEWLDNY
>Mature_364_residues
TTKLIPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVGTCYKAQGQQAAIALGHSLVHGVVKQQRI
DAWLNFLSANPEAYLYCFRGGLRSQLTQQWLQEAGVTAPYVQGGYKGMRQYLIGVIETAPSQQPLLSLSGMTGSGKTDFL
RLRKEAIDLEGIANHRGSSFGKNIDPQPTQINFENQLAIALLRHQLGNHACLLLEDESFLIGRSALPQSFYSAMQTADIV
VLEEDDDIRLTRLLDEYVHKMHLGFSERLGLEAGFEAFSHYLLQSLGSIRKRLGGKQYQELQDMMQQALSQQLNQNQTSQ
HMAWISLLLHKYYDPMYEYQLQKKAGNILFRGSHQAMHEWLDNY

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA [H]

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=356, Percent_Identity=46.6292134831461, Blast_Score=327, Evalue=6e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR017582 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41346; Mature: 41215

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKLIPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVGTCYKAQG
CCCCCCCCHHHCEEEEECCCCEECCCCCCCCCCCCCCCCCCCEEECCCHHHHCCHHHCCC
QQAAIALGHSLVHGVVKQQRIDAWLNFLSANPEAYLYCFRGGLRSQLTQQWLQEAGVTAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCC
YVQGGYKGMRQYLIGVIETAPSQQPLLSLSGMTGSGKTDFLRLRKEAIDLEGIANHRGSS
HHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCCC
FGKNIDPQPTQINFENQLAIALLRHQLGNHACLLLEDESFLIGRSALPQSFYSAMQTADI
CCCCCCCCCCEECCCHHHHHHHHHHHHCCCEEEEEECCCEEECCHHCHHHHHHHHHHCCE
VVLEEDDDIRLTRLLDEYVHKMHLGFSERLGLEAGFEAFSHYLLQSLGSIRKRLGGKQYQ
EEEECCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ELQDMMQQALSQQLNQNQTSQHMAWISLLLHKYYDPMYEYQLQKKAGNILFRGSHQAMHE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEECCHHHHHH
WLDNY
HHHCC
>Mature Secondary Structure 
TTKLIPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVGTCYKAQG
CCCCCCCHHHCEEEEECCCCEECCCCCCCCCCCCCCCCCCCEEECCCHHHHCCHHHCCC
QQAAIALGHSLVHGVVKQQRIDAWLNFLSANPEAYLYCFRGGLRSQLTQQWLQEAGVTAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCC
YVQGGYKGMRQYLIGVIETAPSQQPLLSLSGMTGSGKTDFLRLRKEAIDLEGIANHRGSS
HHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCCC
FGKNIDPQPTQINFENQLAIALLRHQLGNHACLLLEDESFLIGRSALPQSFYSAMQTADI
CCCCCCCCCCEECCCHHHHHHHHHHHHCCCEEEEEECCCEEECCHHCHHHHHHHHHHCCE
VVLEEDDDIRLTRLLDEYVHKMHLGFSERLGLEAGFEAFSHYLLQSLGSIRKRLGGKQYQ
EEEECCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ELQDMMQQALSQQLNQNQTSQHMAWISLLLHKYYDPMYEYQLQKKAGNILFRGSHQAMHE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEECCHHHHHH
WLDNY
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA