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The map label for this gene is yqfA [C]

Identifier: 116873299

GI number: 116873299

Start: 1911746

End: 1912378

Strand: Direct

Name: yqfA [C]

Synonym: lwe1883

Alternate gene names: 116873299

Gene position: 1911746-1912378 (Clockwise)

Preceding gene: 116873281

Following gene: 116873300

Centisome position: 67.93

GC content: 35.86

Gene sequence:

>633_bases
ATGAATGTCACTTCTTACAATTGGAAAGAAGAAGTAGCTAATGCAGTTACGCATGGTATTGGATTTATTCTTAGTATTCC
CGCGCTCGTCTTACTTATTATATTCGCCGCCAGTAAAGATAATCCTCTATATTTAACAAGTTTTTTAATTTATGGAATTT
CACTCATGTTGCTTTATATTTGTTCCACGCTGCTTCATAGTTTTAAACCTAGTAAGGCACGAACTGTTTTTAATATTATG
GACCATGCGGCAATTTATGTTTTAATTGCTGGTAGTTACACACCATTTGTTTTGATTACTGTTCAAGGGACACTTGGATG
GACCTTATTTGGTGTCATTTGGGGATTAGCTATTGCAGGAATTGTTTATAAAATATTTATGACTGGCAAATTAAAACTTT
TATCCACTAGTGTATATTTAATAATGGGCTGGATGGTCTTGCTTGCGATTAAGCCACTCTACGTCGGACTAACTCCGACC
GGATTTTGGTTACTGGCAACTGGTGGCATTATGTTTACAGTTGGCGCAATTTTTTACAGTATCCCCCGAGTACCTTATAT
GCACGCGATTTGGCATTTATTTGTTATCGCAGGAACAGCCTTTATGTACTTCTGTATTTTATTTTATGTTTAA

Upstream 100 bases:

>100_bases
AAAGAGAAAGAAATGGTATTAGTCTTTCTATTCTTCTTTTTTTAGCGTATGATAGAAATATATTAATTCACAAAATTTTG
TAGAAAAGTATGGTGATAAA

Downstream 100 bases:

>100_bases
ATAACGCTTTTTAAAACCTTCTCATTATTGAGAAGGTTTTTATATAGTATGACATAATTGAGGCTTGTTTTTAATTATGT
CATACTATATAATAATTAGC

Product: hemolysin III family protein

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNVTSYNWKEEVANAVTHGIGFILSIPALVLLIIFAASKDNPLYLTSFLIYGISLMLLYICSTLLHSFKPSKARTVFNIM
DHAAIYVLIAGSYTPFVLITVQGTLGWTLFGVIWGLAIAGIVYKIFMTGKLKLLSTSVYLIMGWMVLLAIKPLYVGLTPT
GFWLLATGGIMFTVGAIFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV

Sequences:

>Translated_210_residues
MNVTSYNWKEEVANAVTHGIGFILSIPALVLLIIFAASKDNPLYLTSFLIYGISLMLLYICSTLLHSFKPSKARTVFNIM
DHAAIYVLIAGSYTPFVLITVQGTLGWTLFGVIWGLAIAGIVYKIFMTGKLKLLSTSVYLIMGWMVLLAIKPLYVGLTPT
GFWLLATGGIMFTVGAIFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV
>Mature_210_residues
MNVTSYNWKEEVANAVTHGIGFILSIPALVLLIIFAASKDNPLYLTSFLIYGISLMLLYICSTLLHSFKPSKARTVFNIM
DHAAIYVLIAGSYTPFVLITVQGTLGWTLFGVIWGLAIAGIVYKIFMTGKLKLLSTSVYLIMGWMVLLAIKPLYVGLTPT
GFWLLATGGIMFTVGAIFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=207, Percent_Identity=32.8502415458937, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI52630445, Length=207, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI154759277, Length=231, Percent_Identity=29.4372294372294, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1789266, Length=208, Percent_Identity=41.3461538461538, Blast_Score=161, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI71996356, Length=206, Percent_Identity=34.9514563106796, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24640324, Length=222, Percent_Identity=31.981981981982, Blast_Score=84, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23363; Mature: 23363

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTSYNWKEEVANAVTHGIGFILSIPALVLLIIFAASKDNPLYLTSFLIYGISLMLLYI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
CSTLLHSFKPSKARTVFNIMDHAAIYVLIAGSYTPFVLITVQGTLGWTLFGVIWGLAIAG
HHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
IVYKIFMTGKLKLLSTSVYLIMGWMVLLAIKPLYVGLTPTGFWLLATGGIMFTVGAIFYS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCHHHHHHHHHHH
IPRVPYMHAIWHLFVIAGTAFMYFCILFYV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNVTSYNWKEEVANAVTHGIGFILSIPALVLLIIFAASKDNPLYLTSFLIYGISLMLLYI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
CSTLLHSFKPSKARTVFNIMDHAAIYVLIAGSYTPFVLITVQGTLGWTLFGVIWGLAIAG
HHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
IVYKIFMTGKLKLLSTSVYLIMGWMVLLAIKPLYVGLTPTGFWLLATGGIMFTVGAIFYS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCHHHHHHHHHHH
IPRVPYMHAIWHLFVIAGTAFMYFCILFYV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]