Click here to switch to the map view.

The map label for this gene is nirN [H]

Identifier: 116696220

GI number: 116696220

Start: 2583133

End: 2584632

Strand: Direct

Name: nirN [H]

Synonym: H16_B2284

Alternate gene names: 116696220

Gene position: 2583133-2584632 (Clockwise)

Preceding gene: 116696219

Following gene: 116696221

Centisome position: 88.69

GC content: 69.27

Gene sequence:

>1500_bases
ATGAAGACCGTGCTCCGATGGCTGGTCGGCCTGGCCTTTGCCTGCGCCACGCAAGCCGCCATGGCCGCCGACCCCGCGGC
GCTCTACAGCCAGCACTGCGCCGCCTGCCATGGCGCGGACCGCCTCGGCGCCATGGGCCCCGCGCTGCTGCCGGAAAGCC
TGGAACGCCTGCGCGCCAGCGAACTTGACCAGGTGCTGCACGCTGGCCGCGCCGCCACGCAGATGCCGGCATTCGCCGGC
ACGCTGGCCGAGCCCGACTTGCAGGCCCTGGCGCGCTGGCTGCGCACGGCACCCGCAGCCACGCCGCAATGGAACGCGCA
GGCCATCCGCGCCAGCCATATCGTCCACCACGCCCCCGGCAGCCTGCCGGCGCGGCCGCTGTTCGGCGCCGATCCGCAGA
ACCTGTTCGTGGTGGTGGAGGCCGGCAGCCATCATATGACCGTGCTCGACGGGGACCGGCTGGCACCGGTCCATCGCTTT
GCCACCCGTTTTGCGCTGCACGGCGGCCCCAAGTTCAGCCGCGACGGCCGCTATGTCTACCTGGCCAGCCGCGATGGCTG
GGTCAGCAAGTACGACCTGTGGAACCTGGCCTATGTGGCGGAGATCCGGGTCGGCGTGAACACGCGCAACATCGCCGTCA
GCGATGATGGCCGCTGGGTGCTGGCCGGCAATACGCTGCCGCGCACGCTGGTGCTGCTCAATGCCGAAGACCTGTCGCTG
GCGCGGGTGATCGACGTGAAGGGGCGCAATGGCGAGGCCTCGCGCGTCTCCGCCGTCTACGACGCCGCGCCGCGCCACAG
CTTTATTGCCGCGCTGAAGGATATCGCCGAGGTCTGGGAGATTCCGTACGCCGATGCGGCCGGTGCGCCGCTGCCGGCGC
TGGCACCTCGCGTGGTGGTGCTGGACGATGTGCTCGACGACTTCTTCTTCGACCAACCCTATCGCCATATCCTGGGCGCC
TCGCGCAAGGGTGGCGGCCAGGTGATCGACCTGCAGCAGGGTCGAAAGGTCGCGGCGCTATCGCTTGGCGGCATGCCGCA
CCTGGGCAGCGGCATCACCTGGCAGCGCGACGGACGTGAGGTGATGGCCTCGCCCGACCTCGGGCAAGGGCGCATCACGG
TGATCGACATGCAGGACTGGCACACGGTCGCCACCGTGCCGACCAACGGTCCGGGCTTCTTCCTGCGCAGCCATGAAAAC
ACCCCCTACGCCTGGGCCGATGCCATGATGAGCCCGAGGCGCGACACGCTGCAGGTGATCGACAAGCAAAGCCTGCGGGT
GGTCGGCAGCGTTACTCCGAGCGCGGGGCGCACCGCTGCCCACGTCGAATTCACGCGCGACGGGCGCTACGCGCTGGTCA
GCCTGATGGAGCGCGACGGCGCCATCGTGGTGTACGACGCGGCCACCTTGCAGGAGGTCAGGCGCCTGCCGATGGACAAG
CCCATCGGCAAGTACAACGTCTTCAACAAGACCACGCGCTCGGCCGGCACCAGCCACTGA

Upstream 100 bases:

>100_bases
TGCGCGCCTTTGCGCTGACAGGCAACGCCTGGGCGGAAGATCCGGGCTGCTACCTGAGCGATGCCGAGATCGCGCATGCG
CCGGGCACGGAGGTGGCGGC

Downstream 100 bases:

>100_bases
GCCGGCGTGGTGATGCCCGATCGCAGGAGCCCGAGATGAATCCACCCCTGAAACCCGGCAAGGTCTGGCTGGTCGGCGTC
GGCCCGGGTAGCCCGGACCT

Product: C-type cytochrome (NirN)

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MKTVLRWLVGLAFACATQAAMAADPAALYSQHCAACHGADRLGAMGPALLPESLERLRASELDQVLHAGRAATQMPAFAG
TLAEPDLQALARWLRTAPAATPQWNAQAIRASHIVHHAPGSLPARPLFGADPQNLFVVVEAGSHHMTVLDGDRLAPVHRF
ATRFALHGGPKFSRDGRYVYLASRDGWVSKYDLWNLAYVAEIRVGVNTRNIAVSDDGRWVLAGNTLPRTLVLLNAEDLSL
ARVIDVKGRNGEASRVSAVYDAAPRHSFIAALKDIAEVWEIPYADAAGAPLPALAPRVVVLDDVLDDFFFDQPYRHILGA
SRKGGGQVIDLQQGRKVAALSLGGMPHLGSGITWQRDGREVMASPDLGQGRITVIDMQDWHTVATVPTNGPGFFLRSHEN
TPYAWADAMMSPRRDTLQVIDKQSLRVVGSVTPSAGRTAAHVEFTRDGRYALVSLMERDGAIVVYDAATLQEVRRLPMDK
PIGKYNVFNKTTRSAGTSH

Sequences:

>Translated_499_residues
MKTVLRWLVGLAFACATQAAMAADPAALYSQHCAACHGADRLGAMGPALLPESLERLRASELDQVLHAGRAATQMPAFAG
TLAEPDLQALARWLRTAPAATPQWNAQAIRASHIVHHAPGSLPARPLFGADPQNLFVVVEAGSHHMTVLDGDRLAPVHRF
ATRFALHGGPKFSRDGRYVYLASRDGWVSKYDLWNLAYVAEIRVGVNTRNIAVSDDGRWVLAGNTLPRTLVLLNAEDLSL
ARVIDVKGRNGEASRVSAVYDAAPRHSFIAALKDIAEVWEIPYADAAGAPLPALAPRVVVLDDVLDDFFFDQPYRHILGA
SRKGGGQVIDLQQGRKVAALSLGGMPHLGSGITWQRDGREVMASPDLGQGRITVIDMQDWHTVATVPTNGPGFFLRSHEN
TPYAWADAMMSPRRDTLQVIDKQSLRVVGSVTPSAGRTAAHVEFTRDGRYALVSLMERDGAIVVYDAATLQEVRRLPMDK
PIGKYNVFNKTTRSAGTSH
>Mature_499_residues
MKTVLRWLVGLAFACATQAAMAADPAALYSQHCAACHGADRLGAMGPALLPESLERLRASELDQVLHAGRAATQMPAFAG
TLAEPDLQALARWLRTAPAATPQWNAQAIRASHIVHHAPGSLPARPLFGADPQNLFVVVEAGSHHMTVLDGDRLAPVHRF
ATRFALHGGPKFSRDGRYVYLASRDGWVSKYDLWNLAYVAEIRVGVNTRNIAVSDDGRWVLAGNTLPRTLVLLNAEDLSL
ARVIDVKGRNGEASRVSAVYDAAPRHSFIAALKDIAEVWEIPYADAAGAPLPALAPRVVVLDDVLDDFFFDQPYRHILGA
SRKGGGQVIDLQQGRKVAALSLGGMPHLGSGITWQRDGREVMASPDLGQGRITVIDMQDWHTVATVPTNGPGFFLRSHEN
TPYAWADAMMSPRRDTLQVIDKQSLRVVGSVTPSAGRTAAHVEFTRDGRYALVSLMERDGAIVVYDAATLQEVRRLPMDK
PIGKYNVFNKTTRSAGTSH

Specific function: Inactivation of this cytochrome oxidase results in the loss of nitrite and nitric oxide reductase activities, but not of nitrous oxide reductase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 54127; Mature: 54127

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVLRWLVGLAFACATQAAMAADPAALYSQHCAACHGADRLGAMGPALLPESLERLRAS
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHH
ELDQVLHAGRAATQMPAFAGTLAEPDLQALARWLRTAPAATPQWNAQAIRASHIVHHAPG
HHHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
SLPARPLFGADPQNLFVVVEAGSHHMTVLDGDRLAPVHRFATRFALHGGPKFSRDGRYVY
CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEE
LASRDGWVSKYDLWNLAYVAEIRVGVNTRNIAVSDDGRWVLAGNTLPRTLVLLNAEDLSL
EECCCCCCEEECCCCEEEEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEEECCCCCE
ARVIDVKGRNGEASRVSAVYDAAPRHSFIAALKDIAEVWEIPYADAAGAPLPALAPRVVV
EEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEE
LDDVLDDFFFDQPYRHILGASRKGGGQVIDLQQGRKVAALSLGGMPHLGSGITWQRDGRE
HHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCEECCCCCE
VMASPDLGQGRITVIDMQDWHTVATVPTNGPGFFLRSHENTPYAWADAMMSPRRDTLQVI
EECCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCCHHHHHHCCCCHHHHHHH
DKQSLRVVGSVTPSAGRTAAHVEFTRDGRYALVSLMERDGAIVVYDAATLQEVRRLPMDK
HHCCEEEEEECCCCCCCEEEEEEEECCCCEEEHHHHHCCCCEEEEEHHHHHHHHHCCCCC
PIGKYNVFNKTTRSAGTSH
CCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MKTVLRWLVGLAFACATQAAMAADPAALYSQHCAACHGADRLGAMGPALLPESLERLRAS
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHH
ELDQVLHAGRAATQMPAFAGTLAEPDLQALARWLRTAPAATPQWNAQAIRASHIVHHAPG
HHHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
SLPARPLFGADPQNLFVVVEAGSHHMTVLDGDRLAPVHRFATRFALHGGPKFSRDGRYVY
CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEE
LASRDGWVSKYDLWNLAYVAEIRVGVNTRNIAVSDDGRWVLAGNTLPRTLVLLNAEDLSL
EECCCCCCEEECCCCEEEEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEEECCCCCE
ARVIDVKGRNGEASRVSAVYDAAPRHSFIAALKDIAEVWEIPYADAAGAPLPALAPRVVV
EEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEE
LDDVLDDFFFDQPYRHILGASRKGGGQVIDLQQGRKVAALSLGGMPHLGSGITWQRDGRE
HHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCEECCCCCE
VMASPDLGQGRITVIDMQDWHTVATVPTNGPGFFLRSHENTPYAWADAMMSPRRDTLQVI
EECCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCCHHHHHHCCCCHHHHHHH
DKQSLRVVGSVTPSAGRTAAHVEFTRDGRYALVSLMERDGAIVVYDAATLQEVRRLPMDK
HHCCEEEEEECCCCCCCEEEEEEEECCCCEEEHHHHHCCCCEEEEEHHHHHHHHHCCCCC
PIGKYNVFNKTTRSAGTSH
CCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]