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The map label for this gene is cydA2 [H]

Identifier: 116695403

GI number: 116695403

Start: 1638730

End: 1640169

Strand: Direct

Name: cydA2 [H]

Synonym: H16_B1461

Alternate gene names: 116695403

Gene position: 1638730-1640169 (Clockwise)

Preceding gene: 116695402

Following gene: 116695404

Centisome position: 56.27

GC content: 65.62

Gene sequence:

>1440_bases
ATGTACGGACTCACAGCCCTGGAACTCGCTCGAATCCAGTTCGGATTCACGGTTTCCTTCCACATATTATTTCCCGCCAT
CACGATCGGGCTGGCATGTTTCCTGGCGTTCCTGGAAGCACGCTGGCTCTACACCAAGGACTCGGTGTACAGGACCCTGT
ACCAGTTCTGGATCAAGATCTTCGCGTTGAACTTCGGCATGGGGGTCGTTTCCGGCCTGGTCATGGCCTATGAGTTCGGC
ACCAACTGGTCTGGCTTCTCGCAGTTTGCGGGAAGCGTCACCGGACCGCTGCTGACCTACGAGGTGCTGACCGCCTTCTT
CCTGGAAGCGGGCTTCCTGGGCGTGATGCTGTTCGGCTGGAACCGGGTCGGGCCGGGGCTGCACTTCTTCTCGACGGTGA
TGGTGGCGCTCGGCACCATGATTTCCTCCACCTGGATCCTGGCATCGAACAGCTGGATGCATACGCCGGCCGGCTACGTC
ATCGTTGCCGGCAAGGTGGTGCCGACCGACTGGCTCGAGGTGATCTTCAACCCGTCGTTCCCCTACCGCCTGGCGCACAT
GGTGATCGCCGCGCTGCTGTCGACGGCACTGTTCGTGGCGGCATCCTCGGCCTGGCAGCTGCTGCATGACCGCGCCGTGC
CCGCCGCCCGCAAGATGCTGTCGATGGCGCTGTGGATGGTGCTGATCGCGGCGCCGATCCAGGCGGTGGTGGGCGACGCC
CACGGCCTGAACACGCTGGAGCACCAGCCCGCCAAGATCGCTGCGATGGAGGGGCACTGGAACACCGCGGCCAAGGATGA
CAAGGGCGGCTTCCCGCTGATCGTCTTCGGAATCCCCGACATGGAACGCGAGGAAACCCGCTACGCCATCGAGATTCCGC
GCCTGGGCAGCCTGATCCTCACGCACAGCCTTGACGGCCAGATCCGTGGCCTGAAGGACTTCCCCAGGGAAGACCGCCCC
AATGCCACAGTGCTGTTCTTCACCTTCCGCATCATGGTTGGCCTGGGGGTGGCGATGATCCTGTTCGGCCTGCTGGGCTG
GGTGCTGCGCCGCAACGGCGCGCTGTACCGGTCCAAGGCCTTCCTGCGCCTCGCGGTGGTGATGGGCCCCGCCGGGCTGG
TCGCGCTGCTGGCCGGCTGGATGACCACCGAGATCGGCCGCCAGCCGTGGGTGGTCTATGGACTGCTGCGTACCCATGAT
GCCGTTTCCGCGCATGCGGCCGGCCCGGTGGCGCTGTCGCTGGCACTGTTCGTGGTGATCTACTTCGTCTGCTTCGGCGT
GGGCATCCGCTACATGCTCAAGCTGGCCAGCGCCGGCCCCGCCCCCGACGCGCACCCGCACGAAGAGCCGTCCTACGGCC
CCGGCAGCGTCGTCCCCGCCGCCATCGCCGCGGCTTCCACACCCAACCCGATGGCCCCGCACGGCCAGCGCGAATCCTGA

Upstream 100 bases:

>100_bases
ACCAACTGGACGATTTCATTCATCAAGTCAATTGCGGGACCGGACACAGTCTCGCGCGACACGCCGTCGTGCCGGCGGCC
ACCCCACGGAGAGCACATCG

Downstream 100 bases:

>100_bases
ACAGGTGATCAACATGGGTATCAACCTTCCCGTTATCTGGGCCGCCCTGATCTTCTTCGGTGTGATGATGTACGTCATCA
TGGACGGATTCGATCTTGGC

Product: bd-type quinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MYGLTALELARIQFGFTVSFHILFPAITIGLACFLAFLEARWLYTKDSVYRTLYQFWIKIFALNFGMGVVSGLVMAYEFG
TNWSGFSQFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFSTVMVALGTMISSTWILASNSWMHTPAGYV
IVAGKVVPTDWLEVIFNPSFPYRLAHMVIAALLSTALFVAASSAWQLLHDRAVPAARKMLSMALWMVLIAAPIQAVVGDA
HGLNTLEHQPAKIAAMEGHWNTAAKDDKGGFPLIVFGIPDMEREETRYAIEIPRLGSLILTHSLDGQIRGLKDFPREDRP
NATVLFFTFRIMVGLGVAMILFGLLGWVLRRNGALYRSKAFLRLAVVMGPAGLVALLAGWMTTEIGRQPWVVYGLLRTHD
AVSAHAAGPVALSLALFVVIYFVCFGVGIRYMLKLASAGPAPDAHPHEEPSYGPGSVVPAAIAAASTPNPMAPHGQRES

Sequences:

>Translated_479_residues
MYGLTALELARIQFGFTVSFHILFPAITIGLACFLAFLEARWLYTKDSVYRTLYQFWIKIFALNFGMGVVSGLVMAYEFG
TNWSGFSQFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFSTVMVALGTMISSTWILASNSWMHTPAGYV
IVAGKVVPTDWLEVIFNPSFPYRLAHMVIAALLSTALFVAASSAWQLLHDRAVPAARKMLSMALWMVLIAAPIQAVVGDA
HGLNTLEHQPAKIAAMEGHWNTAAKDDKGGFPLIVFGIPDMEREETRYAIEIPRLGSLILTHSLDGQIRGLKDFPREDRP
NATVLFFTFRIMVGLGVAMILFGLLGWVLRRNGALYRSKAFLRLAVVMGPAGLVALLAGWMTTEIGRQPWVVYGLLRTHD
AVSAHAAGPVALSLALFVVIYFVCFGVGIRYMLKLASAGPAPDAHPHEEPSYGPGSVVPAAIAAASTPNPMAPHGQRES
>Mature_479_residues
MYGLTALELARIQFGFTVSFHILFPAITIGLACFLAFLEARWLYTKDSVYRTLYQFWIKIFALNFGMGVVSGLVMAYEFG
TNWSGFSQFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFSTVMVALGTMISSTWILASNSWMHTPAGYV
IVAGKVVPTDWLEVIFNPSFPYRLAHMVIAALLSTALFVAASSAWQLLHDRAVPAARKMLSMALWMVLIAAPIQAVVGDA
HGLNTLEHQPAKIAAMEGHWNTAAKDDKGGFPLIVFGIPDMEREETRYAIEIPRLGSLILTHSLDGQIRGLKDFPREDRP
NATVLFFTFRIMVGLGVAMILFGLLGWVLRRNGALYRSKAFLRLAVVMGPAGLVALLAGWMTTEIGRQPWVVYGLLRTHD
AVSAHAAGPVALSLALFVVIYFVCFGVGIRYMLKLASAGPAPDAHPHEEPSYGPGSVVPAAIAAASTPNPMAPHGQRES

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=506, Percent_Identity=30.0395256916996, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI1787212, Length=317, Percent_Identity=36.2776025236593, Blast_Score=214, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52187; Mature: 52187

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGLTALELARIQFGFTVSFHILFPAITIGLACFLAFLEARWLYTKDSVYRTLYQFWIKI
CCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FALNFGMGVVSGLVMAYEFGTNWSGFSQFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
NRVGPGLHFFSTVMVALGTMISSTWILASNSWMHTPAGYVIVAGKVVPTDWLEVIFNPSF
CCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEEECCCCEEEEECCCCCHHHHHHHCCCCC
PYRLAHMVIAALLSTALFVAASSAWQLLHDRAVPAARKMLSMALWMVLIAAPIQAVVGDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGLNTLEHQPAKIAAMEGHWNTAAKDDKGGFPLIVFGIPDMEREETRYAIEIPRLGSLIL
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEE
THSLDGQIRGLKDFPREDRPNATVLFFTFRIMVGLGVAMILFGLLGWVLRRNGALYRSKA
EECCCCCCCCHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FLRLAVVMGPAGLVALLAGWMTTEIGRQPWVVYGLLRTHDAVSAHAAGPVALSLALFVVI
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCHHHHCCCCHHHHHHHHHHHH
YFVCFGVGIRYMLKLASAGPAPDAHPHEEPSYGPGSVVPAAIAAASTPNPMAPHGQRES
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYGLTALELARIQFGFTVSFHILFPAITIGLACFLAFLEARWLYTKDSVYRTLYQFWIKI
CCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FALNFGMGVVSGLVMAYEFGTNWSGFSQFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
NRVGPGLHFFSTVMVALGTMISSTWILASNSWMHTPAGYVIVAGKVVPTDWLEVIFNPSF
CCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEEECCCCEEEEECCCCCHHHHHHHCCCCC
PYRLAHMVIAALLSTALFVAASSAWQLLHDRAVPAARKMLSMALWMVLIAAPIQAVVGDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGLNTLEHQPAKIAAMEGHWNTAAKDDKGGFPLIVFGIPDMEREETRYAIEIPRLGSLIL
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEE
THSLDGQIRGLKDFPREDRPNATVLFFTFRIMVGLGVAMILFGLLGWVLRRNGALYRSKA
EECCCCCCCCHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FLRLAVVMGPAGLVALLAGWMTTEIGRQPWVVYGLLRTHDAVSAHAAGPVALSLALFVVI
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCHHHHCCCCHHHHHHHHHHHH
YFVCFGVGIRYMLKLASAGPAPDAHPHEEPSYGPGSVVPAAIAAASTPNPMAPHGQRES
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]