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The map label for this gene is cydB2 [H]

Identifier: 116695404

GI number: 116695404

Start: 1640183

End: 1641190

Strand: Direct

Name: cydB2 [H]

Synonym: H16_B1462

Alternate gene names: 116695404

Gene position: 1640183-1641190 (Clockwise)

Preceding gene: 116695403

Following gene: 116695405

Centisome position: 56.32

GC content: 63.69

Gene sequence:

>1008_bases
ATGGGTATCAACCTTCCCGTTATCTGGGCCGCCCTGATCTTCTTCGGTGTGATGATGTACGTCATCATGGACGGATTCGA
TCTTGGCATCGGCATTCTCTTTCCCTTCGTCGGCGACCGTCATGACCGCGACGTCATGATGAACACGGTGGCCCCGGTCT
GGGACGGCAACGAAACCTGGCTGGTGCTGGGCGGCGCGGCGCTGCTGGGCGCCTTCCCGCTGGCCTACTCGGTGCTGCTC
AGCGCCTTCTACCTGCCGCTGATGTTCATGCTGATGGGGCTGATCTTCCGCGGCGTGGCCTTTGAATTCCGCTTCAAGGC
CAGCGACCGCAGCCGCCCGTACTGGGATGCCGCGTTCACGTGGGGATCGGTGCTCGCCGCCTTCTTCCAGGGCGTGACAC
TGGGCGCCTATATCGACGGCATCGCCATGGAAGGCGCCACCTTCACCGGCGGCGCGCTCGACTGGCTGGCGCCGTTCCCG
GTCTTCTGCGGCGTGGGCGTGGTGATCACCTATGCCTTCCTCGGGGTCACCTGGCTCATCATGAAGACCGAGGGCCGCCT
GCAATGGACCATGCTGCGCGTGACCAACGTGCTGACCGGCGTGATGCTGGCAATGGTCGCCGCGGTGAGCGTGTGGACGC
CGCTGACCCATCCGGAGATCGCGCAACGCTGGTTCGCGCTGCCCAACCTGTTCTTCTTCCTGCCGGTGCCGCTGCTGGTG
CTGTTCTCGGCCTTCGGCATCTACCGGTCCCTGCGCAAGCACCCGAACGTGTCGCCGTTCCTGTACGCGCTGCTGATGAT
CTTCATGGGCTATACCGGGCTTGCCATCAGCATCTGGCCCAATATCATCCCGCCGTCGATCTCGATCTTCGATGCGTCGT
CGCCCCCGCAAAGCCAGGGCTTCGCGCTGGTCGGCACCCTGTTCATCGTGCCGATCATCCTGGCCTACACCTCCTGGTCC
TATTACGTGTTTCGCGGCAAGGTCAAGCGCGGGGAGGGGTACCACTGA

Upstream 100 bases:

>100_bases
TACGGCCCCGGCAGCGTCGTCCCCGCCGCCATCGCCGCGGCTTCCACACCCAACCCGATGGCCCCGCACGGCCAGCGCGA
ATCCTGAACAGGTGATCAAC

Downstream 100 bases:

>100_bases
TGGCCAGGATCCCGCAATCGCGGCTGGCGGCCCGCCTGGGCTGGCTGCTGGCGCTGTGGCTGGCGGGGGTCGGCACCGTC
TTCGTCTGCGCCAGCCTGAT

Product: bd-type quinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MGINLPVIWAALIFFGVMMYVIMDGFDLGIGILFPFVGDRHDRDVMMNTVAPVWDGNETWLVLGGAALLGAFPLAYSVLL
SAFYLPLMFMLMGLIFRGVAFEFRFKASDRSRPYWDAAFTWGSVLAAFFQGVTLGAYIDGIAMEGATFTGGALDWLAPFP
VFCGVGVVITYAFLGVTWLIMKTEGRLQWTMLRVTNVLTGVMLAMVAAVSVWTPLTHPEIAQRWFALPNLFFFLPVPLLV
LFSAFGIYRSLRKHPNVSPFLYALLMIFMGYTGLAISIWPNIIPPSISIFDASSPPQSQGFALVGTLFIVPIILAYTSWS
YYVFRGKVKRGEGYH

Sequences:

>Translated_335_residues
MGINLPVIWAALIFFGVMMYVIMDGFDLGIGILFPFVGDRHDRDVMMNTVAPVWDGNETWLVLGGAALLGAFPLAYSVLL
SAFYLPLMFMLMGLIFRGVAFEFRFKASDRSRPYWDAAFTWGSVLAAFFQGVTLGAYIDGIAMEGATFTGGALDWLAPFP
VFCGVGVVITYAFLGVTWLIMKTEGRLQWTMLRVTNVLTGVMLAMVAAVSVWTPLTHPEIAQRWFALPNLFFFLPVPLLV
LFSAFGIYRSLRKHPNVSPFLYALLMIFMGYTGLAISIWPNIIPPSISIFDASSPPQSQGFALVGTLFIVPIILAYTSWS
YYVFRGKVKRGEGYH
>Mature_334_residues
GINLPVIWAALIFFGVMMYVIMDGFDLGIGILFPFVGDRHDRDVMMNTVAPVWDGNETWLVLGGAALLGAFPLAYSVLLS
AFYLPLMFMLMGLIFRGVAFEFRFKASDRSRPYWDAAFTWGSVLAAFFQGVTLGAYIDGIAMEGATFTGGALDWLAPFPV
FCGVGVVITYAFLGVTWLIMKTEGRLQWTMLRVTNVLTGVMLAMVAAVSVWTPLTHPEIAQRWFALPNLFFFLPVPLLVL
FSAFGIYRSLRKHPNVSPFLYALLMIFMGYTGLAISIWPNIIPPSISIFDASSPPQSQGFALVGTLFIVPIILAYTSWSY
YVFRGKVKRGEGYH

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=372, Percent_Identity=30.1075268817204, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786954, Length=370, Percent_Identity=28.1081081081081, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37210; Mature: 37078

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGINLPVIWAALIFFGVMMYVIMDGFDLGIGILFPFVGDRHDRDVMMNTVAPVWDGNETW
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEE
LVLGGAALLGAFPLAYSVLLSAFYLPLMFMLMGLIFRGVAFEFRFKASDRSRPYWDAAFT
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHH
WGSVLAAFFQGVTLGAYIDGIAMEGATFTGGALDWLAPFPVFCGVGVVITYAFLGVTWLI
HHHHHHHHHCCCHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
MKTEGRLQWTMLRVTNVLTGVMLAMVAAVSVWTPLTHPEIAQRWFALPNLFFFLPVPLLV
EECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LFSAFGIYRSLRKHPNVSPFLYALLMIFMGYTGLAISIWPNIIPPSISIFDASSPPQSQG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEECCCCCCCCC
FALVGTLFIVPIILAYTSWSYYVFRGKVKRGEGYH
HHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure 
GINLPVIWAALIFFGVMMYVIMDGFDLGIGILFPFVGDRHDRDVMMNTVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEE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HHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]