| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is plcN [H]
Identifier: 116691163
GI number: 116691163
Start: 3463131
End: 3465302
Strand: Reverse
Name: plcN [H]
Synonym: Bcen2424_3145
Alternate gene names: 116691163
Gene position: 3465302-3463131 (Counterclockwise)
Preceding gene: 116691165
Following gene: 116691162
Centisome position: 99.47
GC content: 68.42
Gene sequence:
>2172_bases ATGTCTTCGAACAATCGACGCGATTTCCTGCGCCTCGCCGCGCAGTCGGCCGGCGCGATGGCCGCCTACGCGGGCTTCCC GCCCGCGATCCGCAATGCGCTGGCGATGCCGGCCGCCTATCGCACCGGCACGATCCGCGACGTGGAGCACGTCGTGATCT TCATGCAGGAAAACCGTTCGTTCGACCATTACTTCGGCGGACTGCGCGGCGTGCGCGGTTTCAACGACCCGCGCCCGCAC CTGCTGCCGAACGGCGCACCGGTGTGGCAACAGCCGCCGGCGTCGGTGTTCACGAAGAACTACCATTCGCGCGGGCTCGA TCCGTCGGCGCCGTACGTGCTGCCGTTCTATCTCGATCCGAAGCAGACGACCGAATTCCAGCCGGGCACCAACCACGGCT GGAGCAGCGGCCACCTGTCCTGGAACAACGGCCAGTGGGACCAGTGGGTGAACCAGAAGCAGGACGTGCTGACGATGGGC TACCTGAAGCGCCAGGATCTCACGTACCACTACGCGCTCGCCGACGCGTTCACGATCTGCGATTCGTACTTCTGCTCCGC GCATGCCGACACGGCGCCGAACCGCATCTACCTGTGGACCGGCACGGTCGACTCGCGCAACGTCTACGGCAGCGCGCCGA ACGGCCCGGGCATCGGCGAGCGCAACGACGTGAACGGCTACACGTGGACGACCTACGCCGAACGGCTCGAGAACGCGAAG ATCAGCTGGAAGGTGTACCAGGGCGGCACCGGCATCCCGGGCGACCCGACCGACAACTACACCGACAACTCGCTGATGTT CTTCAAGCGCTTCCAGGTGAAGGAAGGCGCGAGCGGCCCGCTGGTCGACAAGGGCGCGTCGGACCATACGCTCGCTGAGC TGAAGGCCGACGTGCAGGCCAACCGGTTGCCGCAGGTGTCGTGGATCGTGTCGCCGTACAAGTACAGCGAGCACCCGCAG GCGTCGCCGACCGACGGCGCGTTCTACATCAACATGGTGCTCGAGGCGCTGACGTCGAACCCCGAGGTGTGGGCGAAGAC GGTGTTCATCCTGAACTACGACGAGAACGACGGGCTGTTCGACCACGTCGTGCCGCCGGTGCCGCCGGTCACGAGCGGCG TGGGCGGGCAGGGCATCGTGTCGTCGAACCTGCTGTCGAACCTCGGCGACGAGCTGCTTGACCTGAACAAGTACCCGGGC GAAATGAGCCCGCTCGTGCCGGGCGCCGACCCGGGCGGCATCCAGCCGATCGGCCTCGGGCCGCGCGTGCCGCTGATCAT CATCTCGCCGTGGACGAAGGGCGGCTGGGTCTGCTCGGAGACGTTCGACCATACGTCGGTGCTGCGTTTCCTCGAAGCGC GCTTCGGCGTGAAGGAGCCGAACATCAGCGCGTGGCGCCGGTCGATCTGCGGCGACCTCACGTCGGCGTTCGACTTCTCC GCGCGTCCCGACACGCGCACGGTGAGCTTCACGGTGCCGCAGCACCTCGCCACCGCCGGCCAGGCGTACCAGGTGCCCGC GCAGCAGTCGATGCCGGCGCAGGAGCCCGGCACGCGTCCGGCGCGTGCGCTGCCGTACGAGCTGTTCGTGCACAGCCGCG TGGGCGCGCATGACGACACGGTGTCGCTCGACTTCGCGAACACCGGCGACGCGGGCGCCGCGTTCTACGTGTACGACCGC CGCAACCCGGCGACGCCGCCGCGCCGCTACGCGGTGTCCGCGCGCGACCGCTTCGTCGATACGTGGAGCACGTCGGCCGC GCGCGGCGAGTACCATCTGGCCGCCTACGGCCCGAACGGCTATCTGTGCGAATTCCAGGGCAACACGCGGCTCGCCGCGG ACGGCCGCCACGCGAACCCCGAAGCGAAGATCGGCTACGACGTGCGCAATCGCCACGTGTACCTGCAACTGCGCAACAGC GGCCGCGCGACGTGCCGCGTGACGGTCGACAACGCGTACAGCCATGCGCATGCACGCACCTACACGCTGGAGCCGGGCGA GCGCGTCGAGGGGCACTTCGAGCTGTCGTCGAGCCACGGCTGGTACGATCTGACGATCACCGCGACCACGCTGCGCGGCG GCGACGACAAGGTCGTGCGCCGCTTCGCGGGCCACGTCGAGACGGGCCGGCCGAGCCACAGCGATCCGGGGCCGGTGAAG CAGACGGCCTGA
Upstream 100 bases:
>100_bases GTCACGGCCGGGACATGCCGGTGCGGGGTAATAACGGCGACGCCAGATCGCCGGCCCGCTCGCCCGGCGCCCCCACTCCC ACCGACCACAGGTGCTCTTC
Downstream 100 bases:
>100_bases CGGCGCGACGCGGCGGTCGTGCGAAGCGGGGCAGTTCGCCCGTAGCGCGCGACCACCGCGTGCCGATTGCAGGCGGGTGG CGCTCCGCCCCGCAGGATTG
Product: phospholipase C
Products: NA
Alternate protein names: PLC-N; Phosphatidylcholine cholinephosphohydrolase; Phosphatidylcholine-hydrolyzing phospholipase C; PC-PLC [H]
Number of amino acids: Translated: 723; Mature: 722
Protein sequence:
>723_residues MSSNNRRDFLRLAAQSAGAMAAYAGFPPAIRNALAMPAAYRTGTIRDVEHVVIFMQENRSFDHYFGGLRGVRGFNDPRPH LLPNGAPVWQQPPASVFTKNYHSRGLDPSAPYVLPFYLDPKQTTEFQPGTNHGWSSGHLSWNNGQWDQWVNQKQDVLTMG YLKRQDLTYHYALADAFTICDSYFCSAHADTAPNRIYLWTGTVDSRNVYGSAPNGPGIGERNDVNGYTWTTYAERLENAK ISWKVYQGGTGIPGDPTDNYTDNSLMFFKRFQVKEGASGPLVDKGASDHTLAELKADVQANRLPQVSWIVSPYKYSEHPQ ASPTDGAFYINMVLEALTSNPEVWAKTVFILNYDENDGLFDHVVPPVPPVTSGVGGQGIVSSNLLSNLGDELLDLNKYPG EMSPLVPGADPGGIQPIGLGPRVPLIIISPWTKGGWVCSETFDHTSVLRFLEARFGVKEPNISAWRRSICGDLTSAFDFS ARPDTRTVSFTVPQHLATAGQAYQVPAQQSMPAQEPGTRPARALPYELFVHSRVGAHDDTVSLDFANTGDAGAAFYVYDR RNPATPPRRYAVSARDRFVDTWSTSAARGEYHLAAYGPNGYLCEFQGNTRLAADGRHANPEAKIGYDVRNRHVYLQLRNS GRATCRVTVDNAYSHAHARTYTLEPGERVEGHFELSSSHGWYDLTITATTLRGGDDKVVRRFAGHVETGRPSHSDPGPVK QTA
Sequences:
>Translated_723_residues MSSNNRRDFLRLAAQSAGAMAAYAGFPPAIRNALAMPAAYRTGTIRDVEHVVIFMQENRSFDHYFGGLRGVRGFNDPRPH LLPNGAPVWQQPPASVFTKNYHSRGLDPSAPYVLPFYLDPKQTTEFQPGTNHGWSSGHLSWNNGQWDQWVNQKQDVLTMG YLKRQDLTYHYALADAFTICDSYFCSAHADTAPNRIYLWTGTVDSRNVYGSAPNGPGIGERNDVNGYTWTTYAERLENAK ISWKVYQGGTGIPGDPTDNYTDNSLMFFKRFQVKEGASGPLVDKGASDHTLAELKADVQANRLPQVSWIVSPYKYSEHPQ ASPTDGAFYINMVLEALTSNPEVWAKTVFILNYDENDGLFDHVVPPVPPVTSGVGGQGIVSSNLLSNLGDELLDLNKYPG EMSPLVPGADPGGIQPIGLGPRVPLIIISPWTKGGWVCSETFDHTSVLRFLEARFGVKEPNISAWRRSICGDLTSAFDFS ARPDTRTVSFTVPQHLATAGQAYQVPAQQSMPAQEPGTRPARALPYELFVHSRVGAHDDTVSLDFANTGDAGAAFYVYDR RNPATPPRRYAVSARDRFVDTWSTSAARGEYHLAAYGPNGYLCEFQGNTRLAADGRHANPEAKIGYDVRNRHVYLQLRNS GRATCRVTVDNAYSHAHARTYTLEPGERVEGHFELSSSHGWYDLTITATTLRGGDDKVVRRFAGHVETGRPSHSDPGPVK QTA >Mature_722_residues SSNNRRDFLRLAAQSAGAMAAYAGFPPAIRNALAMPAAYRTGTIRDVEHVVIFMQENRSFDHYFGGLRGVRGFNDPRPHL LPNGAPVWQQPPASVFTKNYHSRGLDPSAPYVLPFYLDPKQTTEFQPGTNHGWSSGHLSWNNGQWDQWVNQKQDVLTMGY LKRQDLTYHYALADAFTICDSYFCSAHADTAPNRIYLWTGTVDSRNVYGSAPNGPGIGERNDVNGYTWTTYAERLENAKI SWKVYQGGTGIPGDPTDNYTDNSLMFFKRFQVKEGASGPLVDKGASDHTLAELKADVQANRLPQVSWIVSPYKYSEHPQA SPTDGAFYINMVLEALTSNPEVWAKTVFILNYDENDGLFDHVVPPVPPVTSGVGGQGIVSSNLLSNLGDELLDLNKYPGE MSPLVPGADPGGIQPIGLGPRVPLIIISPWTKGGWVCSETFDHTSVLRFLEARFGVKEPNISAWRRSICGDLTSAFDFSA RPDTRTVSFTVPQHLATAGQAYQVPAQQSMPAQEPGTRPARALPYELFVHSRVGAHDDTVSLDFANTGDAGAAFYVYDRR NPATPPRRYAVSARDRFVDTWSTSAARGEYHLAAYGPNGYLCEFQGNTRLAADGRHANPEAKIGYDVRNRHVYLQLRNSG RATCRVTVDNAYSHAHARTYTLEPGERVEGHFELSSSHGWYDLTITATTLRGGDDKVVRRFAGHVETGRPSHSDPGPVKQ TA
Specific function: Hydrolyzes phosphatidylserine as well as phosphatidylcholine [H]
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR008475 - InterPro: IPR017767 - InterPro: IPR006311 [H]
Pfam domain/function: PF05506 DUF756; PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 79742; Mature: 79611
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSNNRRDFLRLAAQSAGAMAAYAGFPPAIRNALAMPAAYRTGTIRDVEHVVIFMQENRS CCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCHHCCCCCCCEEEEEEEEECCCC FDHYFGGLRGVRGFNDPRPHLLPNGAPVWQQPPASVFTKNYHSRGLDPSAPYVLPFYLDP HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCEEEEEEECC KQTTEFQPGTNHGWSSGHLSWNNGQWDQWVNQKQDVLTMGYLKRQDLTYHYALADAFTIC CCCCCCCCCCCCCCCCCEEECCCCCHHHHHCCHHCEEHHHHHECCCCEEEEHHHHHHHHH DSYFCSAHADTAPNRIYLWTGTVDSRNVYGSAPNGPGIGERNDVNGYTWTTYAERLENAK HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCE ISWKVYQGGTGIPGDPTDNYTDNSLMFFKRFQVKEGASGPLVDKGASDHTLAELKADVQA EEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH NRLPQVSWIVSPYKYSEHPQASPTDGAFYINMVLEALTSNPEVWAKTVFILNYDENDGLF CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCH DHVVPPVPPVTSGVGGQGIVSSNLLSNLGDELLDLNKYPGEMSPLVPGADPGGIQPIGLG HHCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCC PRVPLIIISPWTKGGWVCSETFDHTSVLRFLEARFGVKEPNISAWRRSICGDLTSAFDFS CCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC ARPDTRTVSFTVPQHLATAGQAYQVPAQQSMPAQEPGTRPARALPYELFVHSRVGAHDDT CCCCCEEEEEECHHHHHCCCCEEECCHHHCCCCCCCCCCCHHCCCCEEEEECCCCCCCCE VSLDFANTGDAGAAFYVYDRRNPATPPRRYAVSARDRFVDTWSTSAARGEYHLAAYGPNG EEEEECCCCCCCEEEEEEECCCCCCCCHHEEECHHHHEEECCCCCCCCCCEEEEEECCCC YLCEFQGNTRLAADGRHANPEAKIGYDVRNRHVYLQLRNSGRATCRVTVDNAYSHAHART EEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCEEE YTLEPGERVEGHFELSSSHGWYDLTITATTLRGGDDKVVRRFAGHVETGRPSHSDPGPVK EEECCCCCCCEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCC QTA CCC >Mature Secondary Structure SSNNRRDFLRLAAQSAGAMAAYAGFPPAIRNALAMPAAYRTGTIRDVEHVVIFMQENRS CCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCHHCCCCCCCEEEEEEEEECCCC FDHYFGGLRGVRGFNDPRPHLLPNGAPVWQQPPASVFTKNYHSRGLDPSAPYVLPFYLDP HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCEEEEEEECC KQTTEFQPGTNHGWSSGHLSWNNGQWDQWVNQKQDVLTMGYLKRQDLTYHYALADAFTIC CCCCCCCCCCCCCCCCCEEECCCCCHHHHHCCHHCEEHHHHHECCCCEEEEHHHHHHHHH DSYFCSAHADTAPNRIYLWTGTVDSRNVYGSAPNGPGIGERNDVNGYTWTTYAERLENAK HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCE ISWKVYQGGTGIPGDPTDNYTDNSLMFFKRFQVKEGASGPLVDKGASDHTLAELKADVQA EEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH NRLPQVSWIVSPYKYSEHPQASPTDGAFYINMVLEALTSNPEVWAKTVFILNYDENDGLF CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCH DHVVPPVPPVTSGVGGQGIVSSNLLSNLGDELLDLNKYPGEMSPLVPGADPGGIQPIGLG HHCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCC PRVPLIIISPWTKGGWVCSETFDHTSVLRFLEARFGVKEPNISAWRRSICGDLTSAFDFS CCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC ARPDTRTVSFTVPQHLATAGQAYQVPAQQSMPAQEPGTRPARALPYELFVHSRVGAHDDT CCCCCEEEEEECHHHHHCCCCEEECCHHHCCCCCCCCCCCHHCCCCEEEEECCCCCCCCE VSLDFANTGDAGAAFYVYDRRNPATPPRRYAVSARDRFVDTWSTSAARGEYHLAAYGPNG EEEEECCCCCCCEEEEEEECCCCCCCCHHEEECHHHHEEECCCCCCCCCCEEEEEECCCC YLCEFQGNTRLAADGRHANPEAKIGYDVRNRHVYLQLRNSGRATCRVTVDNAYSHAHART EEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCEEE YTLEPGERVEGHFELSSSHGWYDLTITATTLRGGDDKVVRRFAGHVETGRPSHSDPGPVK EEECCCCCCCEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCC QTA CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10523590 [H]