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The map label for this gene is ybdB [C]

Identifier: 116691152

GI number: 116691152

Start: 3451569

End: 3451973

Strand: Reverse

Name: ybdB [C]

Synonym: Bcen2424_3134

Alternate gene names: 116691152

Gene position: 3451973-3451569 (Counterclockwise)

Preceding gene: 116691154

Following gene: 116691151

Centisome position: 99.08

GC content: 66.91

Gene sequence:

>405_bases
ATGGACGAAAACGCAGTCCGCGAATTGCTGGATCGCCTGCTGGCCCCGTGGGTCCGCTCGCTGGGTCTGGTCCCCGTGTC
GATCGGCGATGACAGCGTCACGCTGCGCCTGCCGTTTTCCGGCGAGTTCCGTCATTCGGGCGGCATCATCTGCGGCCAGG
TGTTCACGGCGGCCGCCGACACCGCGATGGTGGTCGCGATCTCGGCCGCGCTCGGCGAATTCCGGCCGATGACGACGGTG
TCGCTGAACACCAACTTCATGCGTCCCGTGCGCAAGGGCGACGTGCTCGTCACCGCGCGCGTGCTGCGAATGGGCCGCAA
CCTCGTGTTCGGCGAAGTCGAGCTGTTCGACGAGGACGGCAAGATGGCCGTCCACGCGACGTCGACCTACGCGCTCGTCA
GCTGA

Upstream 100 bases:

>100_bases
TTGCCAGCGCGGTAACGAGCGATCGCAGTTCGCGCGCTCCCGGTATGATGACGCCACACGCGTTGCGCGGCGGTCGCGCA
ACGCTTTCTGGACATCGAAG

Downstream 100 bases:

>100_bases
GCGGCGCGATGTTCGACCAGATCGTCTTTGCGGGCGGCGGCAATCGCTGCTGGTGGCAGGCCGGCTTCTGGGATGTCGCA
CAGCCGGCCCTCGCCCTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Phenylacetic Acid Degradation-Related Protein; Thioesterase Family Protein; Phenylacetic Acid Degradation-Like Protein

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MDENAVRELLDRLLAPWVRSLGLVPVSIGDDSVTLRLPFSGEFRHSGGIICGQVFTAAADTAMVVAISAALGEFRPMTTV
SLNTNFMRPVRKGDVLVTARVLRMGRNLVFGEVELFDEDGKMAVHATSTYALVS

Sequences:

>Translated_134_residues
MDENAVRELLDRLLAPWVRSLGLVPVSIGDDSVTLRLPFSGEFRHSGGIICGQVFTAAADTAMVVAISAALGEFRPMTTV
SLNTNFMRPVRKGDVLVTARVLRMGRNLVFGEVELFDEDGKMAVHATSTYALVS
>Mature_134_residues
MDENAVRELLDRLLAPWVRSLGLVPVSIGDDSVTLRLPFSGEFRHSGGIICGQVFTAAADTAMVVAISAALGEFRPMTTV
SLNTNFMRPVRKGDVLVTARVLRMGRNLVFGEVELFDEDGKMAVHATSTYALVS

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14512; Mature: 14512

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDENAVRELLDRLLAPWVRSLGLVPVSIGDDSVTLRLPFSGEFRHSGGIICGQVFTAAAD
CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCEEEHHHHHHHCC
TAMVVAISAALGEFRPMTTVSLNTNFMRPVRKGDVLVTARVLRMGRNLVFGEVELFDEDG
HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHCCCCEEEEEEEEEECCC
KMAVHATSTYALVS
CEEEEECCEEEEEC
>Mature Secondary Structure
MDENAVRELLDRLLAPWVRSLGLVPVSIGDDSVTLRLPFSGEFRHSGGIICGQVFTAAAD
CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCEEEHHHHHHHCC
TAMVVAISAALGEFRPMTTVSLNTNFMRPVRKGDVLVTARVLRMGRNLVFGEVELFDEDG
HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHCCCCEEEEEEEEEECCC
KMAVHATSTYALVS
CEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA