| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116691151
Identifier: 116691151
GI number: 116691151
Start: 3450694
End: 3451560
Strand: Reverse
Name: 116691151
Synonym: Bcen2424_3133
Alternate gene names: NA
Gene position: 3451560-3450694 (Counterclockwise)
Preceding gene: 116691152
Following gene: 116691149
Centisome position: 99.07
GC content: 69.67
Gene sequence:
>867_bases ATGTTCGACCAGATCGTCTTTGCGGGCGGCGGCAATCGCTGCTGGTGGCAGGCCGGCTTCTGGGATGTCGCACAGCCGGC CCTCGCCCTGCGCCCGCGCGTGATCACCGGCATCTCGGCCGGCGCGGCCACCGCCTGCATGCTGTATACGCGCGACGCCG CATGGGTGATGCGCTATTACGAAGAGGCGCTGCGCCACAACCGGAAGAATGCCTACTGGGGCAACCTGTTCGGGCGCGAG CCCGTGTTTCCGCATTACCGGATCTATCGTCAGGCGCTGCTCGACATCTACGGCGAGCCGTTCGCGCAGCTCGCCGCGGC GCCGGAGATCCGCATCGGCGTGTCGCACGTGCCGCGCTGGCTCGGTGCGCGCAGCGCGGTCGCGGCCGGCCTCGTCGCAT ACAACATCGAGAAGTACGTGCGCAAGACGCTGCACCCGACGCTCGGGCGCACGCTCGGGTTTCGCCCCGAATTCGTGCGG GCGCAGGCCTGCACGCACGTCGACGAACTCGCCGACCTGATCCTGCAGTCGTCCTGCACGCCGCCGTTCACGCCGGTGCT GCGGCGTGGCGGCCGGCCGGTGCTCGACGGCGGGATGGTCGACAACGTGCCGGTCGATGCGCTCGATCCGTCGCCGGGCG ACGTGCTGGTGCTGGTCACGCGGCTGTATCCGCGTCCGCAGATGTTCACGGTCGCGCATGGCGACCAGCGGCGGCTGTAC GTGCAGCCGTCGAGCAAGGTGCCGATTTCGAGCTGGGATTACACGAGCCCGTCGCAGATGCGGCATGCGTACGATCTCGG GCGGCGCGACGGTGAGCACTTCCTCACGCGGGTCGGCGCGATGACGGGCGGCCGCGTGGCCGCCTGA
Upstream 100 bases:
>100_bases GCCGCAACCTCGTGTTCGGCGAAGTCGAGCTGTTCGACGAGGACGGCAAGATGGCCGTCCACGCGACGTCGACCTACGCG CTCGTCAGCTGAGCGGCGCG
Downstream 100 bases:
>100_bases CGAGCGGGAATGAAAGGGGGCCGCGCGACGCGCGCAGCCCGTGCGATCAGCGCTTGCGGATCGGCGTCAGCGCTTCCGGG TTGGCGACGCTCGACATGTC
Product: patatin
Products: NA
Alternate protein names: Patatin-Like Phospholipase; PatatiN-Like Phospholipase; Patatin-Like Phospholipase Family Protein
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MFDQIVFAGGGNRCWWQAGFWDVAQPALALRPRVITGISAGAATACMLYTRDAAWVMRYYEEALRHNRKNAYWGNLFGRE PVFPHYRIYRQALLDIYGEPFAQLAAAPEIRIGVSHVPRWLGARSAVAAGLVAYNIEKYVRKTLHPTLGRTLGFRPEFVR AQACTHVDELADLILQSSCTPPFTPVLRRGGRPVLDGGMVDNVPVDALDPSPGDVLVLVTRLYPRPQMFTVAHGDQRRLY VQPSSKVPISSWDYTSPSQMRHAYDLGRRDGEHFLTRVGAMTGGRVAA
Sequences:
>Translated_288_residues MFDQIVFAGGGNRCWWQAGFWDVAQPALALRPRVITGISAGAATACMLYTRDAAWVMRYYEEALRHNRKNAYWGNLFGRE PVFPHYRIYRQALLDIYGEPFAQLAAAPEIRIGVSHVPRWLGARSAVAAGLVAYNIEKYVRKTLHPTLGRTLGFRPEFVR AQACTHVDELADLILQSSCTPPFTPVLRRGGRPVLDGGMVDNVPVDALDPSPGDVLVLVTRLYPRPQMFTVAHGDQRRLY VQPSSKVPISSWDYTSPSQMRHAYDLGRRDGEHFLTRVGAMTGGRVAA >Mature_288_residues MFDQIVFAGGGNRCWWQAGFWDVAQPALALRPRVITGISAGAATACMLYTRDAAWVMRYYEEALRHNRKNAYWGNLFGRE PVFPHYRIYRQALLDIYGEPFAQLAAAPEIRIGVSHVPRWLGARSAVAAGLVAYNIEKYVRKTLHPTLGRTLGFRPEFVR AQACTHVDELADLILQSSCTPPFTPVLRRGGRPVLDGGMVDNVPVDALDPSPGDVLVLVTRLYPRPQMFTVAHGDQRRLY VQPSSKVPISSWDYTSPSQMRHAYDLGRRDGEHFLTRVGAMTGGRVAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32154; Mature: 32154
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDQIVFAGGGNRCWWQAGFWDVAQPALALRPRVITGISAGAATACMLYTRDAAWVMRYY CCCCEEEECCCCEEEEECCCHHHHCHHHHHCCHHEECCCCCHHHEEHEEECHHHHHHHHH EEALRHNRKNAYWGNLFGREPVFPHYRIYRQALLDIYGEPFAQLAAAPEIRIGVSHVPRW HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCEEECHHHHHHH LGARSAVAAGLVAYNIEKYVRKTLHPTLGRTLGFRPEFVRAQACTHVDELADLILQSSCT HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC PPFTPVLRRGGRPVLDGGMVDNVPVDALDPSPGDVLVLVTRLYPRPQMFTVAHGDQRRLY CCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCEEEEEECCCEEEE VQPSSKVPISSWDYTSPSQMRHAYDLGRRDGEHFLTRVGAMTGGRVAA ECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MFDQIVFAGGGNRCWWQAGFWDVAQPALALRPRVITGISAGAATACMLYTRDAAWVMRYY CCCCEEEECCCCEEEEECCCHHHHCHHHHHCCHHEECCCCCHHHEEHEEECHHHHHHHHH EEALRHNRKNAYWGNLFGREPVFPHYRIYRQALLDIYGEPFAQLAAAPEIRIGVSHVPRW HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCEEECHHHHHHH LGARSAVAAGLVAYNIEKYVRKTLHPTLGRTLGFRPEFVRAQACTHVDELADLILQSSCT HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC PPFTPVLRRGGRPVLDGGMVDNVPVDALDPSPGDVLVLVTRLYPRPQMFTVAHGDQRRLY CCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCEEEEEECCCEEEE VQPSSKVPISSWDYTSPSQMRHAYDLGRRDGEHFLTRVGAMTGGRVAA ECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA