| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116691027
Identifier: 116691027
GI number: 116691027
Start: 3322045
End: 3322791
Strand: Reverse
Name: 116691027
Synonym: Bcen2424_3009
Alternate gene names: NA
Gene position: 3322791-3322045 (Counterclockwise)
Preceding gene: 116691028
Following gene: 116691026
Centisome position: 95.38
GC content: 71.22
Gene sequence:
>747_bases ATGGATCTCGACGGCGCCAGCCGCAATCTCACTGTCGCCGCGTTGCTGACGCTGTCCGGCGGCTATCTCGACGCGTACAC GTATGTCGGCCACGGCCACGTGTTCGCGAACACGATGACCGGCAACGTCGCGCTGCTCGGCATCAACCTGTCGGCCGGCG AATGGGCCGCGGCGCTGCATCACGTGCCGCCGCTCGGCGGCTTCGTGCTCGCGGTGTTCGTCGCGCACCTGCTCGGTCTC GCCGCGGGGCGCGGCTGGATGCGGCATACGGCGTTCGTGAGCCTGATCGTCGAAATCGCGTTTCTCGGCGTCGCCGCGAG CGGCCTCGTCGGCGCGTCGAGCGCATGGCTGATTCCGGGCATCTCGTTCGTCGCGACGCTGCAGACGCTGTCGTTCACCC ATCTCGAGGAACTGTCGTACACGTCGGTGATGACGACCGGCAACCTGCGGCGTGCCGCGCAGAAGCTGTTCGTCGGGCTG ATCCCGCGCTACGACGCGGGGGCGCTGCACGACTCGGCGCTGCTCGCGACGATCAGTTTCTGTTTCCTGGCCGGCGCGGT GGTCGGCGGCCTCGTGACGCGGCTCGTGCCGGACATCGCGCTGTGGGGCGCCGTGCTGCTGCTCGTCGGCGCGTTCGCGG AGATCGTGCGGCGGGCGTGGCGTCGCGCGGGGAACGGCGGCGCGGGCGGCGGGGACGGTAACGGCGACGCGGGCGCCGGC AGCGACGGGGCGGCGCAGACGGCCTGA
Upstream 100 bases:
>100_bases GCAGGTGGTGCGCTGATCGGGCTCACGGGCATCGGGCAGTGAGCTGCGCACAACCGCCCTCCCGTGCGCGATACTGGCGC GACTTTTCACGGGAGGATCG
Downstream 100 bases:
>100_bases CGGCAGGCGGCAATCGGACAACCCCAAGCCGCAAGTCGCAAGCGGCAAGCGGCAAGCGGCAAGCGGCAAGCGGCAAGCGG CAAGCGGCAAGCGGCAAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MDLDGASRNLTVAALLTLSGGYLDAYTYVGHGHVFANTMTGNVALLGINLSAGEWAAALHHVPPLGGFVLAVFVAHLLGL AAGRGWMRHTAFVSLIVEIAFLGVAASGLVGASSAWLIPGISFVATLQTLSFTHLEELSYTSVMTTGNLRRAAQKLFVGL IPRYDAGALHDSALLATISFCFLAGAVVGGLVTRLVPDIALWGAVLLLVGAFAEIVRRAWRRAGNGGAGGGDGNGDAGAG SDGAAQTA
Sequences:
>Translated_248_residues MDLDGASRNLTVAALLTLSGGYLDAYTYVGHGHVFANTMTGNVALLGINLSAGEWAAALHHVPPLGGFVLAVFVAHLLGL AAGRGWMRHTAFVSLIVEIAFLGVAASGLVGASSAWLIPGISFVATLQTLSFTHLEELSYTSVMTTGNLRRAAQKLFVGL IPRYDAGALHDSALLATISFCFLAGAVVGGLVTRLVPDIALWGAVLLLVGAFAEIVRRAWRRAGNGGAGGGDGNGDAGAG SDGAAQTA >Mature_248_residues MDLDGASRNLTVAALLTLSGGYLDAYTYVGHGHVFANTMTGNVALLGINLSAGEWAAALHHVPPLGGFVLAVFVAHLLGL AAGRGWMRHTAFVSLIVEIAFLGVAASGLVGASSAWLIPGISFVATLQTLSFTHLEELSYTSVMTTGNLRRAAQKLFVGL IPRYDAGALHDSALLATISFCFLAGAVVGGLVTRLVPDIALWGAVLLLVGAFAEIVRRAWRRAGNGGAGGGDGNGDAGAG SDGAAQTA
Specific function: Unknown
COG id: COG3619
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25282; Mature: 25282
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLDGASRNLTVAALLTLSGGYLDAYTYVGHGHVFANTMTGNVALLGINLSAGEWAAALH CCCCCCCCCEEEEEEEHHCCCCEEHHEEECCCEEEEEEECCCEEEEEEECCCCHHHHHHH HVPPLGGFVLAVFVAHLLGLAAGRGWMRHTAFVSLIVEIAFLGVAASGLVGASSAWLIPG CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC ISFVATLQTLSFTHLEELSYTSVMTTGNLRRAAQKLFVGLIPRYDAGALHDSALLATISF HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH CFLAGAVVGGLVTRLVPDIALWGAVLLLVGAFAEIVRRAWRRAGNGGAGGGDGNGDAGAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC SDGAAQTA CCCCCCCC >Mature Secondary Structure MDLDGASRNLTVAALLTLSGGYLDAYTYVGHGHVFANTMTGNVALLGINLSAGEWAAALH CCCCCCCCCEEEEEEEHHCCCCEEHHEEECCCEEEEEEECCCEEEEEEECCCCHHHHHHH HVPPLGGFVLAVFVAHLLGLAAGRGWMRHTAFVSLIVEIAFLGVAASGLVGASSAWLIPG CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC ISFVATLQTLSFTHLEELSYTSVMTTGNLRRAAQKLFVGLIPRYDAGALHDSALLATISF HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH CFLAGAVVGGLVTRLVPDIALWGAVLLLVGAFAEIVRRAWRRAGNGGAGGGDGNGDAGAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC SDGAAQTA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA