| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is argT [H]
Identifier: 116690424
GI number: 116690424
Start: 2665973
End: 2666755
Strand: Direct
Name: argT [H]
Synonym: Bcen2424_2404
Alternate gene names: 116690424
Gene position: 2665973-2666755 (Clockwise)
Preceding gene: 116690422
Following gene: 116690425
Centisome position: 76.52
GC content: 65.26
Gene sequence:
>783_bases ATGAAGAAGGCCGCCCTGTGCGCCGCCCTCGCCCTCGTGGCGGGCAGCGCCTTCGCGAAGGAGTGGAAGACCGTGCGGAT CGGCGTCGATGCCAGCTACCCGCCGTTCGAGTCGACCGCGCCGAGCGGCGAGATCGTCGGTTTCGACGTCGATCTCACCA AGGAAATCTGCAAGCGGATCAACGTGAAGTGCGTGTGGGTGGCGCAGGATCTCGACGGGATCATCCCGGCGCTGAAGGCG AAGAAGTACGACGTCATCGTGTCGTCGCTGACCGTGACGGACAAGCGTCGCGAGCAGATCGACTTCTCCGACAAGGTGTA CGACGCACCCGCGCGGATGATCGCGAAAACCGGCTCGCCGCTGCTGCCGACGGTCGCGTCGCTCAAGGGCAAGCGCGTCG GCGTCGAGCAGGGCTCCACGCAGGAAACCTACGCGAAGGCGTACTGGGAACCGCAGGGCGTGACGATCGTTCCTTACCAG AACCAGGACCAGGTCTATGCCGATCTCGGCACGGGCCGCCTCGACGCGACGCTGCAGGATGAACTGCAGGCCGACTACGG CTTCCTGCGCACGCCGCGCGGCAAGGGCTTCGCGTTCGCCGGGCCGGAAGTGAAGGATCCGAAGACGATCGGCGACGGCA CCGCGATCGGCCTGCGCAAGGAAGATACCGACCTGAAGCTGAGAATCAACCAGGCGCTGGCCGACATGCACAAGGACGGT ACGTACGACCGGCTGTCGCACAAGTACTTCTCGTTCAGCGTCTACTCGGCGCCGGCCCGCTGA
Upstream 100 bases:
>100_bases AGAGCGCCGATCGGCGATTTTTGGCCGTCTAGAATACGCCGCGGCGCCCGGTTCGACCGGCCGCGAGCGCCCCCGGAAAG TCAGCAACAGAAGGATGGAA
Downstream 100 bases:
>100_bases ACGTCGACAAGCAGCAGCGGATGCGGGGGCGGCCCCGCGTCCGGGCAGTACAGGCAGTCAACCACGCGCCGCCCGCCCCC TTGCCCGCCGTTCGCGCGAC
Product: cationic amino acid ABC transporter, periplasmic binding protein
Products: ADP; phosphate; L-ornithine [Cytoplasm]; ADP; L-arginine [Cytoplasm]; L-lysine [Cytoplasm] [C]
Alternate protein names: LAO-binding protein [H]
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MKKAALCAALALVAGSAFAKEWKTVRIGVDASYPPFESTAPSGEIVGFDVDLTKEICKRINVKCVWVAQDLDGIIPALKA KKYDVIVSSLTVTDKRREQIDFSDKVYDAPARMIAKTGSPLLPTVASLKGKRVGVEQGSTQETYAKAYWEPQGVTIVPYQ NQDQVYADLGTGRLDATLQDELQADYGFLRTPRGKGFAFAGPEVKDPKTIGDGTAIGLRKEDTDLKLRINQALADMHKDG TYDRLSHKYFSFSVYSAPAR
Sequences:
>Translated_260_residues MKKAALCAALALVAGSAFAKEWKTVRIGVDASYPPFESTAPSGEIVGFDVDLTKEICKRINVKCVWVAQDLDGIIPALKA KKYDVIVSSLTVTDKRREQIDFSDKVYDAPARMIAKTGSPLLPTVASLKGKRVGVEQGSTQETYAKAYWEPQGVTIVPYQ NQDQVYADLGTGRLDATLQDELQADYGFLRTPRGKGFAFAGPEVKDPKTIGDGTAIGLRKEDTDLKLRINQALADMHKDG TYDRLSHKYFSFSVYSAPAR >Mature_260_residues MKKAALCAALALVAGSAFAKEWKTVRIGVDASYPPFESTAPSGEIVGFDVDLTKEICKRINVKCVWVAQDLDGIIPALKA KKYDVIVSSLTVTDKRREQIDFSDKVYDAPARMIAKTGSPLLPTVASLKGKRVGVEQGSTQETYAKAYWEPQGVTIVPYQ NQDQVYADLGTGRLDATLQDELQADYGFLRTPRGKGFAFAGPEVKDPKTIGDGTAIGLRKEDTDLKLRINQALADMHKDG TYDRLSHKYFSFSVYSAPAR
Specific function: This periplasmic binding protein is involved in an arginine transport system. ArgT and histidine-binding protein J (hisJ) interact with a common membrane-bound receptor, hisP [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788649, Length=258, Percent_Identity=56.2015503875969, Blast_Score=303, Evalue=1e-83, Organism=Escherichia coli, GI1788648, Length=233, Percent_Identity=54.5064377682403, Blast_Score=282, Evalue=1e-77, Organism=Escherichia coli, GI1787085, Length=250, Percent_Identity=36.4, Blast_Score=164, Evalue=7e-42, Organism=Escherichia coli, GI1787088, Length=250, Percent_Identity=34.8, Blast_Score=154, Evalue=8e-39, Organism=Escherichia coli, GI1788228, Length=263, Percent_Identity=31.9391634980989, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1787031, Length=248, Percent_Identity=32.258064516129, Blast_Score=114, Evalue=7e-27,
Paralogues:
None
Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005768 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 28476; Mature: 28476
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKAALCAALALVAGSAFAKEWKTVRIGVDASYPPFESTAPSGEIVGFDVDLTKEICKRI CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC NVKCVWVAQDLDGIIPALKAKKYDVIVSSLTVTDKRREQIDFSDKVYDAPARMIAKTGSP CCEEEEEECCCHHHHHHHCCCCEEEEEEEEEECCCHHHHCCCCCHHHHHHHHHHHHCCCC LLPTVASLKGKRVGVEQGSTQETYAKAYWEPQGVTIVPYQNQDQVYADLGTGRLDATLQD CCHHHHHCCCCEECCCCCCCHHHHHHHEECCCCEEEEEECCCCCEEEECCCCCCCCHHHH ELQADYGFLRTPRGKGFAFAGPEVKDPKTIGDGTAIGLRKEDTDLKLRINQALADMHKDG HHHHCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHCCC TYDRLSHKYFSFSVYSAPAR CHHHHCCEEEEEEEEECCCC >Mature Secondary Structure MKKAALCAALALVAGSAFAKEWKTVRIGVDASYPPFESTAPSGEIVGFDVDLTKEICKRI CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC NVKCVWVAQDLDGIIPALKAKKYDVIVSSLTVTDKRREQIDFSDKVYDAPARMIAKTGSP CCEEEEEECCCHHHHHHHCCCCEEEEEEEEEECCCHHHHCCCCCHHHHHHHHHHHHCCCC LLPTVASLKGKRVGVEQGSTQETYAKAYWEPQGVTIVPYQNQDQVYADLGTGRLDATLQD CCHHHHHCCCCEECCCCCCCHHHHHHHEECCCCEEEEEECCCCCEEEECCCCCCCCHHHH ELQADYGFLRTPRGKGFAFAGPEVKDPKTIGDGTAIGLRKEDTDLKLRINQALADMHKDG HHHHCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHCCC TYDRLSHKYFSFSVYSAPAR CHHHHCCEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-ornithine [Periplasm]; H2O; ATP; L-arginine [Periplasm]; L-lysine [Periplasm] [C]
Specific reaction: ATP + L-ornithine [Periplasm] + H2O = ADP + phosphate + L-ornithine [Cytoplasm] ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] ATP + L-lysine [Periplasm] + H2O = ADP + phosphate + L-lysine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 3040734; 9298646 [H]