| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690372
Identifier: 116690372
GI number: 116690372
Start: 2614264
End: 2614722
Strand: Direct
Name: 116690372
Synonym: Bcen2424_2352
Alternate gene names: NA
Gene position: 2614264-2614722 (Clockwise)
Preceding gene: 116690371
Following gene: 116690373
Centisome position: 75.04
GC content: 66.01
Gene sequence:
>459_bases ATGGCTAACGTCTACGACAAACTGAAGTCGCTCGGCATCGAGCTCCCGACCGCCGGCGCCCCGGCTGCCGCCTACGTGAT GAGCGCGCAAAGCGGCAACACGGTCTACCTGTCGGGCCACATCGCGAAGAAGGACGGCAAGGTCTGGGCCGGCAAGCTCG GCGCGGATCTGCAAACGGAAGACGGCAAGGCCGCCGCCCGCTCGATCGCGATCGACCTGCTCGCGACGCTGCACGCGCAC ACCGGCGACCTGAACAAGGTCACGCGCATCGTCAAGCTGATGAGCCTCGTCAACTCGACGCTCGACTTCACCGAACAGCA CGTCGTGACGAACGGCGCGTCGGAGCTGATCGCCGAAGTGTTCGGCGACGCGGGCAAGCATGCGCGCTCGGCATTCGGCG TCGCGCAGATCCCGCTCGGCGCGTGCGTCGAGATCGAACTGATCGCCGAAGTCGCGTAA
Upstream 100 bases:
>100_bases CGAGAAGATCGAGGAAGGCGTCGCGCGCCTCGGCAAGCTGCTGCGCGAGCGCCTCTGATCCCCTTTTTCCTGTCACGACT CTCTACGAGGAATCGAACAC
Downstream 100 bases:
>100_bases CGGGCGCAGCGCGATGCACGGTCGTCTCGTTCGCTTCAAGCAGGTCGACGTGTTCACGTCGGTGCCGTTCAAGGGCAATC CGCTTGCCGTGGTGTTCGAC
Product: endoribonuclease L-PSP
Products: NA
Alternate protein names: Translation Initiation Inhibitor; Endoribonuclease L-PSP Family Protein; Endoribonuclease L-Psp; Endoribonuclease; Translation Initiation Inhibitor YjgF Family; Transcription Regulator; Transcriptional Regulator; Endoribonuclease L-PSP Superfamily; Translation Initiation Inhibitor Protein; L-PSP Family Endoribonuclease; Endoribonuclease Family Protein; Endoribonuclease L-PSP Family; Translation Initiation Inhibitor Protein YjgF Family; YjgF Family Translation Initiation Inhibitor; 2-Aminomuconate Deaminase; YjgF-Family Protein; Endoribonuclease-L-PSP Family Protein; Peptidase C; Creatininase; Translation Initiation Inhibitor YjgF
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MANVYDKLKSLGIELPTAGAPAAAYVMSAQSGNTVYLSGHIAKKDGKVWAGKLGADLQTEDGKAAARSIAIDLLATLHAH TGDLNKVTRIVKLMSLVNSTLDFTEQHVVTNGASELIAEVFGDAGKHARSAFGVAQIPLGACVEIELIAEVA
Sequences:
>Translated_152_residues MANVYDKLKSLGIELPTAGAPAAAYVMSAQSGNTVYLSGHIAKKDGKVWAGKLGADLQTEDGKAAARSIAIDLLATLHAH TGDLNKVTRIVKLMSLVNSTLDFTEQHVVTNGASELIAEVFGDAGKHARSAFGVAQIPLGACVEIELIAEVA >Mature_151_residues ANVYDKLKSLGIELPTAGAPAAAYVMSAQSGNTVYLSGHIAKKDGKVWAGKLGADLQTEDGKAAARSIAIDLLATLHAHT GDLNKVTRIVKLMSLVNSTLDFTEQHVVTNGASELIAEVFGDAGKHARSAFGVAQIPLGACVEIELIAEVA
Specific function: Unknown
COG id: COG0251
COG function: function code J; Putative translation initiation inhibitor, yjgF family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15783; Mature: 15652
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANVYDKLKSLGIELPTAGAPAAAYVMSAQSGNTVYLSGHIAKKDGKVWAGKLGADLQTE CCCHHHHHHHCCCCCCCCCCCHHHHEEECCCCCEEEEEEEEECCCCCEEECCCCCCCCCC DGKAAARSIAIDLLATLHAHTGDLNKVTRIVKLMSLVNSTLDFTEQHVVTNGASELIAEV CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH FGDAGKHARSAFGVAQIPLGACVEIELIAEVA HCCCCHHHHHHCCHHCCCCCCEEEEEEEEECC >Mature Secondary Structure ANVYDKLKSLGIELPTAGAPAAAYVMSAQSGNTVYLSGHIAKKDGKVWAGKLGADLQTE CCHHHHHHHCCCCCCCCCCCHHHHEEECCCCCEEEEEEEEECCCCCEEECCCCCCCCCC DGKAAARSIAIDLLATLHAHTGDLNKVTRIVKLMSLVNSTLDFTEQHVVTNGASELIAEV CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH FGDAGKHARSAFGVAQIPLGACVEIELIAEVA HCCCCHHHHHHCCHHCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA