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The map label for this gene is yddE [C]

Identifier: 116690373

GI number: 116690373

Start: 2614736

End: 2615620

Strand: Direct

Name: yddE [C]

Synonym: Bcen2424_2353

Alternate gene names: 116690373

Gene position: 2614736-2615620 (Clockwise)

Preceding gene: 116690372

Following gene: 116690374

Centisome position: 75.05

GC content: 72.54

Gene sequence:

>885_bases
ATGCACGGTCGTCTCGTTCGCTTCAAGCAGGTCGACGTGTTCACGTCGGTGCCGTTCAAGGGCAATCCGCTTGCCGTGGT
GTTCGACGCCGATTCGCTCGGCGACGACGCCATGCTCGAGATCGCCCGCTGGACGAACCTGTCGGAAACGACGTTCCTCT
GCACGCCGACCGATCCGGAAGCCGACTATCGCGTGCGGATCTTCACGACCGGCGGCGAACTGCCGTTCGCCGGCCACCCG
ACGCTCGGCACCGCGCATGCGTTCCTGGAAAGCGGCGCGCGGCCGCGCACGCCGGGCCGGCTGATCCAGCAGTGCGGGGT
CGGCCGGGTTGCGCTGCGCGAGCAGGGCGGCCGCTGGGCGTTCGCCGCGCCGCCGGCACGCGTCACGCCGCTCGACCGTT
CGGACTACGCGGTACTGGCCGCCGCGCTGCGCAGCGACGCGCTCGACCTGGACGCCGAGCCGTGCGCGGTGGACAACGGC
GCACCGTGGCTGGTCGTGCGGCTGAAGTCGGCCGATGCGTGCATCGGCCTGTCGCCCGATCCTGCCGCGCTGGCGGCGCT
GACCCACCGCTACGGCGTGGACGGCCTCGCCGCCTACGCGCCGCACGCCGAAGGCGGCCCCGCGACGTTCGAGATCCGCT
GCCTGATGACCGGCGGCCAGTTCGGCACGCCCGGCGAGGACCCCGTCACCGGCAGCGCGAACGCCGCGCTCGCGGGGCTG
CTGACGCGCCAGGAACGCCGCCCCGGCCAATCGTATACAGCCCGCCAGGGCACGGCGATCGGCCGCGACGGCCGCATCTT
CGTCAGCTACGACGACGACGGCACGACCTGGATCGGCGGCCACGTCGTCACGGTCGTCGACGGCACGTTCCGGTCACCCG
ACTGA

Upstream 100 bases:

>100_bases
GGCAAGCATGCGCGCTCGGCATTCGGCGTCGCGCAGATCCCGCTCGGCGCGTGCGTCGAGATCGAACTGATCGCCGAAGT
CGCGTAACGGGCGCAGCGCG

Downstream 100 bases:

>100_bases
CATTTCGCGATGTGGATGGCGCCGGCTCGTCCGGCGCCCTACGCTTTGCCCAACTATCGCAAAAACGTTCCAGCCAGTAA
TATCGGGCCTAATCCGTTGT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MHGRLVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDAMLEIARWTNLSETTFLCTPTDPEADYRVRIFTTGGELPFAGHP
TLGTAHAFLESGARPRTPGRLIQQCGVGRVALREQGGRWAFAAPPARVTPLDRSDYAVLAAALRSDALDLDAEPCAVDNG
APWLVVRLKSADACIGLSPDPAALAALTHRYGVDGLAAYAPHAEGGPATFEIRCLMTGGQFGTPGEDPVTGSANAALAGL
LTRQERRPGQSYTARQGTAIGRDGRIFVSYDDDGTTWIGGHVVTVVDGTFRSPD

Sequences:

>Translated_294_residues
MHGRLVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDAMLEIARWTNLSETTFLCTPTDPEADYRVRIFTTGGELPFAGHP
TLGTAHAFLESGARPRTPGRLIQQCGVGRVALREQGGRWAFAAPPARVTPLDRSDYAVLAAALRSDALDLDAEPCAVDNG
APWLVVRLKSADACIGLSPDPAALAALTHRYGVDGLAAYAPHAEGGPATFEIRCLMTGGQFGTPGEDPVTGSANAALAGL
LTRQERRPGQSYTARQGTAIGRDGRIFVSYDDDGTTWIGGHVVTVVDGTFRSPD
>Mature_294_residues
MHGRLVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDAMLEIARWTNLSETTFLCTPTDPEADYRVRIFTTGGELPFAGHP
TLGTAHAFLESGARPRTPGRLIQQCGVGRVALREQGGRWAFAAPPARVTPLDRSDYAVLAAALRSDALDLDAEPCAVDNG
APWLVVRLKSADACIGLSPDPAALAALTHRYGVDGLAAYAPHAEGGPATFEIRCLMTGGQFGTPGEDPVTGSANAALAGL
LTRQERRPGQSYTARQGTAIGRDGRIFVSYDDDGTTWIGGHVVTVVDGTFRSPD

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=273, Percent_Identity=31.1355311355311, Blast_Score=90, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321818, Length=302, Percent_Identity=34.7682119205298, Blast_Score=170, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31164; Mature: 31164

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGRLVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDAMLEIARWTNLSETTFLCTPTDPE
CCCCEEEEEEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC
ADYRVRIFTTGGELPFAGHPTLGTAHAFLESGARPRTPGRLIQQCGVGRVALREQGGRWA
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCCEEE
FAAPPARVTPLDRSDYAVLAAALRSDALDLDAEPCAVDNGAPWLVVRLKSADACIGLSPD
EECCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEECCCEEEECCCC
PAALAALTHRYGVDGLAAYAPHAEGGPATFEIRCLMTGGQFGTPGEDPVTGSANAALAGL
HHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
LTRQERRPGQSYTARQGTAIGRDGRIFVSYDDDGTTWIGGHVVTVVDGTFRSPD
HHHHHCCCCCCCCCCCCCEECCCCEEEEEECCCCCEEECCEEEEEEECCCCCCC
>Mature Secondary Structure
MHGRLVRFKQVDVFTSVPFKGNPLAVVFDADSLGDDAMLEIARWTNLSETTFLCTPTDPE
CCCCEEEEEEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC
ADYRVRIFTTGGELPFAGHPTLGTAHAFLESGARPRTPGRLIQQCGVGRVALREQGGRWA
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCCEEE
FAAPPARVTPLDRSDYAVLAAALRSDALDLDAEPCAVDNGAPWLVVRLKSADACIGLSPD
EECCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEECCCEEEECCCC
PAALAALTHRYGVDGLAAYAPHAEGGPATFEIRCLMTGGQFGTPGEDPVTGSANAALAGL
HHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
LTRQERRPGQSYTARQGTAIGRDGRIFVSYDDDGTTWIGGHVVTVVDGTFRSPD
HHHHHCCCCCCCCCCCCCEECCCCEEEEEECCCCCEEECCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]