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The map label for this gene is yfdE [H]

Identifier: 116690180

GI number: 116690180

Start: 2403848

End: 2405059

Strand: Reverse

Name: yfdE [H]

Synonym: Bcen2424_2159

Alternate gene names: 116690180

Gene position: 2405059-2403848 (Counterclockwise)

Preceding gene: 116690181

Following gene: 116690179

Centisome position: 69.03

GC content: 71.86

Gene sequence:

>1212_bases
ATGAACCCGACGCGTGGCGCACTGGACGGCCTGAAGGTCGTCGACCTGAGCCGAGTGCTCGGCGGCCCGTACTGCACGCA
GGCGCTCGCCGACCACGGCGCGACGGTGGTCAAGATCGAGCCGCCCGCCGGCGACGAGACGCGTGGCTGGGGGCCGCCGT
TCCTCGGCGACACGGCGTGGTACTTCATGGGCGTGAACCGCAACAAGGAAGGGCTCGCGCTCGATCTGTCGCACGACGAA
GGGCGCGCGATCCTGTGGCGCCTGCTCGAAGAAGCCGACGTGCTCGTGGAGAATTTCAAGCCCGGCACGCTCGCGCGCTG
GGGGATGGATTACGCACGCGACCTGCAGCCGCTTTTCCCGCGCCTGATCCACTGCGCGGTGACGGGCTTCGGCGACGACG
GCCCGCTCGGCGGGCTGCCGGGCTACGATGCGGTGATCCAGGCGATGGCCGGGCTGATGAGCGTGAACGGCGAACGCGAC
GGCGACGCGACGCGCATCGGCCTGCCGATCGTCGACATGGTCACGGGGCTCAACGCGCTCGCCGGCATCCTGCTGGCGCT
CGCGGAGCGCGAGAAGAGCGGGCGCGGGCAGTCGATCGACGTCGCGCTGTACGACTGCGGCGTGTCGCTGCTGCATCCGC
ACCTGCCGAACTTCTTCGGCTCGGGCCGCGTGCCGGAACGCAGCGGCAACGCGCATCCGAACATCGCGCCGTACGACAGC
TACCGCACGGCGACCGTGCCGATCTTCCTCGCGGTCGGCAACGACCGGCAGTTCGCGCGATTGGTCGCGCATCTCGGCGC
GCCGGCGCTCGCCGACGATCCGCGCTTCGTCGACAACCGCAGCCGCTGCGCGCACCGGCCCGAGCTGAAGGCCGAGCTGG
AAGCGCGGCTCGTCGCGCACGCATGCGAGCCGCTCGCGCGCGACCTGATGGCGGCCGGCGTGCCGTGCGGGCCGGTGCGC
ACGGTGGCCGACGTCGCGCACGATCCGCATGCGCTGCATCGCAACCTGTTCGTCGAGATCGGCGCGTATCGCGGCACCGC
GTCGCCGGTGAAGCTGTCGCGCACGCCGGCCACCTACCGTTCGGCGCCGCCCGCGCTCGGCCGCGACACGCGCGCAGTGC
TCGACCGGCTCGGCGTCGATCGCGCGCTTCAGCAGCAACTGCTCGATGCCGGCGTGCTGAAGACGGCAGCCGGCGAGTCG
CCGCCCGACTGA

Upstream 100 bases:

>100_bases
CGGCCCCGCGCGACGACGAATCGGCCGCGTCCGACGCGCTGCTGCGCGGCCTGCCGGTCGCGCTCGACATGGCGCTCGAC
CTGCTGCCGGAGGTCGAACG

Downstream 100 bases:

>100_bases
CACGACGCCGCCGGCCGGCGGCGTGATGCCGGCCACCCGGGAAAGGCGCGCGCGAGTCGCGCCCCCGATCATCACAATAT
GGAGACATCGATGAGCCGTC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNPTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPAGDETRGWGPPFLGDTAWYFMGVNRNKEGLALDLSHDE
GRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPLFPRLIHCAVTGFGDDGPLGGLPGYDAVIQAMAGLMSVNGERD
GDATRIGLPIVDMVTGLNALAGILLALAEREKSGRGQSIDVALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
YRTATVPIFLAVGNDRQFARLVAHLGAPALADDPRFVDNRSRCAHRPELKAELEARLVAHACEPLARDLMAAGVPCGPVR
TVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRSAPPALGRDTRAVLDRLGVDRALQQQLLDAGVLKTAAGES
PPD

Sequences:

>Translated_403_residues
MNPTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPAGDETRGWGPPFLGDTAWYFMGVNRNKEGLALDLSHDE
GRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPLFPRLIHCAVTGFGDDGPLGGLPGYDAVIQAMAGLMSVNGERD
GDATRIGLPIVDMVTGLNALAGILLALAEREKSGRGQSIDVALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
YRTATVPIFLAVGNDRQFARLVAHLGAPALADDPRFVDNRSRCAHRPELKAELEARLVAHACEPLARDLMAAGVPCGPVR
TVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRSAPPALGRDTRAVLDRLGVDRALQQQLLDAGVLKTAAGES
PPD
>Mature_403_residues
MNPTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPAGDETRGWGPPFLGDTAWYFMGVNRNKEGLALDLSHDE
GRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPLFPRLIHCAVTGFGDDGPLGGLPGYDAVIQAMAGLMSVNGERD
GDATRIGLPIVDMVTGLNALAGILLALAEREKSGRGQSIDVALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
YRTATVPIFLAVGNDRQFARLVAHLGAPALADDPRFVDNRSRCAHRPELKAELEARLVAHACEPLARDLMAAGVPCGPVR
TVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRSAPPALGRDTRAVLDRLGVDRALQQQLLDAGVLKTAAGES
PPD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=394, Percent_Identity=36.0406091370558, Blast_Score=256, Evalue=3e-68,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=33.8095238095238, Blast_Score=241, Evalue=7e-64,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=31.9796954314721, Blast_Score=202, Evalue=4e-52,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=30.4761904761905, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI266456254, Length=399, Percent_Identity=29.0726817042606, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI42794625, Length=399, Percent_Identity=29.0726817042606, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=33.7121212121212, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI266458397, Length=264, Percent_Identity=33.7121212121212, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=35.3741496598639, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=35.3741496598639, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI87082093, Length=353, Percent_Identity=38.5269121813031, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI1788717, Length=399, Percent_Identity=30.5764411027569, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1786222, Length=408, Percent_Identity=26.9607843137255, Blast_Score=121, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI32564160, Length=347, Percent_Identity=25.0720461095101, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=255, Percent_Identity=27.843137254902, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648431, Length=381, Percent_Identity=40.1574803149606, Blast_Score=262, Evalue=3e-70,
Organism=Drosophila melanogaster, GI24585488, Length=393, Percent_Identity=28.7531806615776, Blast_Score=98, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43104; Mature: 43104

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPAGDETRGWGPPFLGDTAW
CCCCCCHHCCCHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEE
YFMGVNRNKEGLALDLSHDEGRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPLFP
EEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHH
RLIHCAVTGFGDDGPLGGLPGYDAVIQAMAGLMSVNGERDGDATRIGLPIVDMVTGLNAL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHH
AGILLALAEREKSGRGQSIDVALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
HHHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRTATVPIFLAVGNDRQFARLVAHLGAPALADDPRFVDNRSRCAHRPELKAELEARLVAH
CCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
ACEPLARDLMAAGVPCGPVRTVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYR
HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHEEEEECCCCCCCCEEECCCCCHHC
SAPPALGRDTRAVLDRLGVDRALQQQLLDAGVLKTAAGESPPD
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNPTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPAGDETRGWGPPFLGDTAW
CCCCCCHHCCCHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEE
YFMGVNRNKEGLALDLSHDEGRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPLFP
EEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHH
RLIHCAVTGFGDDGPLGGLPGYDAVIQAMAGLMSVNGERDGDATRIGLPIVDMVTGLNAL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHH
AGILLALAEREKSGRGQSIDVALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
HHHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRTATVPIFLAVGNDRQFARLVAHLGAPALADDPRFVDNRSRCAHRPELKAELEARLVAH
CCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
ACEPLARDLMAAGVPCGPVRTVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYR
HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHEEEEECCCCCCCCEEECCCCCHHC
SAPPALGRDTRAVLDRLGVDRALQQQLLDAGVLKTAAGESPPD
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]