| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690100
Identifier: 116690100
GI number: 116690100
Start: 2309881
End: 2310636
Strand: Direct
Name: 116690100
Synonym: Bcen2424_2079
Alternate gene names: NA
Gene position: 2309881-2310636 (Clockwise)
Preceding gene: 116690088
Following gene: 116690101
Centisome position: 66.3
GC content: 69.97
Gene sequence:
>756_bases ATGGCTCGGAGTATAACATTCCGATTTACGCCTATGAAACCTCATCGCGGCCGCGCGCCGAGCGCTGCGACCCTCGTTGC GACCACCGTCATGGGCGTCGCGCTGACGCTTTTCGCGGCTCCCGCGGCGCATGCGCAAAAGGCCCCGGCGGTCGCCGACG GCACCCCCGAAATCGACGCGTCGATCGCCGGCAAGCAGTGGCAGCAGGCGCTCGCGCAGCTCGACGCGCGCATCGCGTCG AACCCGCACGACGTGCAGGCGCAGTTCAAGCGCGGCACCGTGCTGGCCCGCCTGAACCGCGACGACGACGCGATCCAGCA GTTCGTCGCGATCACGCAGGCGTACCCCGAACTGCCCGAGCCGTACAACAACCTCGCGGCGCTCTACGCGAAGCACGGCC GCTATGACGAGGCGCGCACCGCGCTCGTCACCGCGACGCAATCGAACCCGGGCTACTCGCTCGCGTACGAGAACCTCGGC GATCTCTACCTGCGCCTCGCGGCCGAGTCGTACAAGCGCGCGCAATCGCTCGGCCGCACGAGCGGCGCGACCGCGCAGCG CCTCGCCGATCTGCAGAAGATCGTGTCGCCGTCGAAAGCCGCGCCGAACGCCCGCGCGACGTCGCCGGCCACGCGCGACT ACACCGACCGCGCCGCCGCGAACGTGAGCACCACCACGCTGCCGATGTCGCCGACGTTCCAGTTCAGCGGTCCGTCGGGC GCACTGGCGGCGCCGTACGTCGCGCCGTCGCAATAA
Upstream 100 bases:
>100_bases ATCACATGGGGCGGTCAGGCTGCAAGCACAGCGGTGACGGCCACGAGAGGCTAAGAAAGACTGTCTGCCGCTCGCCGGAA CGCGCAGACGTTTTGTTAGA
Downstream 100 bases:
>100_bases GCGGCGCGACCTTCCTTCCCTCCCAACCTGAGGATCGCAATGAAACGTCTGTTGCTGGCGCTTGGCGGCGCCGCCCTTCT CGCGACCGCGCCCGCGTTCG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Family Protein; Signal Peptide Protein; Tpr Repeat-Containing Protein; Tetratricopeptide TPR_1 Repeat-Containing Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Protein; Exported Protein
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MARSITFRFTPMKPHRGRAPSAATLVATTVMGVALTLFAAPAAHAQKAPAVADGTPEIDASIAGKQWQQALAQLDARIAS NPHDVQAQFKRGTVLARLNRDDDAIQQFVAITQAYPELPEPYNNLAALYAKHGRYDEARTALVTATQSNPGYSLAYENLG DLYLRLAAESYKRAQSLGRTSGATAQRLADLQKIVSPSKAAPNARATSPATRDYTDRAAANVSTTTLPMSPTFQFSGPSG ALAAPYVAPSQ
Sequences:
>Translated_251_residues MARSITFRFTPMKPHRGRAPSAATLVATTVMGVALTLFAAPAAHAQKAPAVADGTPEIDASIAGKQWQQALAQLDARIAS NPHDVQAQFKRGTVLARLNRDDDAIQQFVAITQAYPELPEPYNNLAALYAKHGRYDEARTALVTATQSNPGYSLAYENLG DLYLRLAAESYKRAQSLGRTSGATAQRLADLQKIVSPSKAAPNARATSPATRDYTDRAAANVSTTTLPMSPTFQFSGPSG ALAAPYVAPSQ >Mature_250_residues ARSITFRFTPMKPHRGRAPSAATLVATTVMGVALTLFAAPAAHAQKAPAVADGTPEIDASIAGKQWQQALAQLDARIASN PHDVQAQFKRGTVLARLNRDDDAIQQFVAITQAYPELPEPYNNLAALYAKHGRYDEARTALVTATQSNPGYSLAYENLGD LYLRLAAESYKRAQSLGRTSGATAQRLADLQKIVSPSKAAPNARATSPATRDYTDRAAANVSTTTLPMSPTFQFSGPSGA LAAPYVAPSQ
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26685; Mature: 26554
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARSITFRFTPMKPHRGRAPSAATLVATTVMGVALTLFAAPAAHAQKAPAVADGTPEIDA CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCH SIAGKQWQQALAQLDARIASNPHDVQAQFKRGTVLARLNRDDDAIQQFVAITQAYPELPE HHCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCC PYNNLAALYAKHGRYDEARTALVTATQSNPGYSLAYENLGDLYLRLAAESYKRAQSLGRT CHHHHHHHHHHCCCCHHHHEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCC SGATAQRLADLQKIVSPSKAAPNARATSPATRDYTDRAAANVSTTTLPMSPTFQFSGPSG CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCEEECCCCC ALAAPYVAPSQ CCCCCCCCCCC >Mature Secondary Structure ARSITFRFTPMKPHRGRAPSAATLVATTVMGVALTLFAAPAAHAQKAPAVADGTPEIDA CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCH SIAGKQWQQALAQLDARIASNPHDVQAQFKRGTVLARLNRDDDAIQQFVAITQAYPELPE HHCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCC PYNNLAALYAKHGRYDEARTALVTATQSNPGYSLAYENLGDLYLRLAAESYKRAQSLGRT CHHHHHHHHHHCCCCHHHHEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCC SGATAQRLADLQKIVSPSKAAPNARATSPATRDYTDRAAANVSTTTLPMSPTFQFSGPSG CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCEEECCCCC ALAAPYVAPSQ CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA