| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690046
Identifier: 116690046
GI number: 116690046
Start: 2245058
End: 2246347
Strand: Reverse
Name: 116690046
Synonym: Bcen2424_2025
Alternate gene names: NA
Gene position: 2246347-2245058 (Counterclockwise)
Preceding gene: 116690047
Following gene: 116690045
Centisome position: 64.48
GC content: 70.23
Gene sequence:
>1290_bases ATGGACGAGTTGACACTCGGTTTGATCGGCGCGGGCGCCGTCGTGGTGGGCGGCGTCGTGGTCTACAACGCATGGCAGGG CGCGAAAGTGCGGCGCAGGATGCCGCGCCCGATGCCGGAGGAAGCGGCCGAGGCGATGAACCGCCCCGAGCGCGACGAAG AGTTGCCGTTCATCGAACCGGTGCGTCAGCCGGTGCGCCGCGAGCCCGCGGCACCGGTCGCGGCGGCGCCGGCGGCTGCG GCCGACGCCGCGCGCGTCGAGCCGACGTTCGGCGGGGCCGGGAGCGGCGCGGCGCCGGCCGATACGCCGGCCGACCTGCA GGCCGAGGCGACGGGCGTCGACACGTCGGCCGAATCGACCGAACCGGTTGCCGGCGAAGAGGCCGTGCCCGCCGCCACGC ATGAAGCGGCGGCCGAACCGGCCGAGCCGACCGAACCGGTGATGCCGGCCGCGACGACGGTCTCGTCGGCGCCGCCTGCG ATCGTCGACCGCCGGATCGACTGCATCGTGCCGATCCGCCTCAACGGCCCGCTGCCGGGCGACAAGATCCTGCCGGTCGC GCAGCGACTGCGCCGCGCGGGCAGCAAGCCCGTGCACATCGAAGGCAAGCCGGAAGGCGGCCAGTGGGAACTGCTGCAGA ACGGCGTGCGCTACGAAGAGCTGCGCGCGGCTGCCCAGCTTGCGAACCGCAGCGGCGCGCTGAACGAGCTCGAATTCTCC GAATTCGTGACGGGCGTCCAGCAGTTCGCGGACGCGATCGACGGCGCGCCGGAATTCCCGGACATGATGGAAACGGTCGC GATGGCGCGCGAGCTCGACGCGTTTGCCGCGCAGTGCGACGCGCAACTGTCGATCAACGTGATGTCGGACGGTGCGCCGT GGTCGGCGAACTACGTGCAGGCGGTCGCGTCGCAGGACGGGCTGCTGCTGTCGCGCGACGGCACGCGCTTCGTGAAGCTC GACGCGAAGCAGAACCCGGTATTCATGCTGCAGTTCGGCGACACCAACTTCCTGCGCGACGACCTGACGTACAAGGGCGG CAACATGATCACGCTGGTGCTCGACGTGCCGGTGGCGGAAGAGGACATCCTGCCGTTCCGGCTGATGTGCGATTACGCGA AGTCGCTGTCCGAGCGGATCGGCGCACGCGTCGTCGACGATTCGCGCCGGCCGCTGCCGGAGTCGACGCTGGTCGCGATC GACCAGCAACTGATGAAGCTGTACGCGAAGCTCGAGGAAGCCGGCATCCCGGCCGGTTCGCCGATCACGCGCCGCCTCTT TAGCCAGTAA
Upstream 100 bases:
>100_bases TTTGCCCAGAATTGACGTTTGACGAAACCGGACCGCGTTCGCGCGGCGCACGAGCGCCCGTTCGCGGTCCCGACGAAAAA GAATTGCTGATGGAGCGTGC
Downstream 100 bases:
>100_bases TGCGATGGCGCGGGCGACGGTCGTTGGCGCCGTCGTCCGTCGCTGCGGCGCGCACTGTTTCGTGTGCGCTGCAGCACGTC ATCCGGCCCGCATTGCGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: ZipA Related Protein Possibly Involved In; Protein ZipA; Transmembrane Protein; Chromosome Segregation Protein Smc
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPEEAAEAMNRPERDEELPFIEPVRQPVRREPAAPVAAAPAAA ADAARVEPTFGGAGSGAAPADTPADLQAEATGVDTSAESTEPVAGEEAVPAATHEAAAEPAEPTEPVMPAATTVSSAPPA IVDRRIDCIVPIRLNGPLPGDKILPVAQRLRRAGSKPVHIEGKPEGGQWELLQNGVRYEELRAAAQLANRSGALNELEFS EFVTGVQQFADAIDGAPEFPDMMETVAMARELDAFAAQCDAQLSINVMSDGAPWSANYVQAVASQDGLLLSRDGTRFVKL DAKQNPVFMLQFGDTNFLRDDLTYKGGNMITLVLDVPVAEEDILPFRLMCDYAKSLSERIGARVVDDSRRPLPESTLVAI DQQLMKLYAKLEEAGIPAGSPITRRLFSQ
Sequences:
>Translated_429_residues MDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPEEAAEAMNRPERDEELPFIEPVRQPVRREPAAPVAAAPAAA ADAARVEPTFGGAGSGAAPADTPADLQAEATGVDTSAESTEPVAGEEAVPAATHEAAAEPAEPTEPVMPAATTVSSAPPA IVDRRIDCIVPIRLNGPLPGDKILPVAQRLRRAGSKPVHIEGKPEGGQWELLQNGVRYEELRAAAQLANRSGALNELEFS EFVTGVQQFADAIDGAPEFPDMMETVAMARELDAFAAQCDAQLSINVMSDGAPWSANYVQAVASQDGLLLSRDGTRFVKL DAKQNPVFMLQFGDTNFLRDDLTYKGGNMITLVLDVPVAEEDILPFRLMCDYAKSLSERIGARVVDDSRRPLPESTLVAI DQQLMKLYAKLEEAGIPAGSPITRRLFSQ >Mature_429_residues MDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPEEAAEAMNRPERDEELPFIEPVRQPVRREPAAPVAAAPAAA ADAARVEPTFGGAGSGAAPADTPADLQAEATGVDTSAESTEPVAGEEAVPAATHEAAAEPAEPTEPVMPAATTVSSAPPA IVDRRIDCIVPIRLNGPLPGDKILPVAQRLRRAGSKPVHIEGKPEGGQWELLQNGVRYEELRAAAQLANRSGALNELEFS EFVTGVQQFADAIDGAPEFPDMMETVAMARELDAFAAQCDAQLSINVMSDGAPWSANYVQAVASQDGLLLSRDGTRFVKL DAKQNPVFMLQFGDTNFLRDDLTYKGGNMITLVLDVPVAEEDILPFRLMCDYAKSLSERIGARVVDDSRRPLPESTLVAI DQQLMKLYAKLEEAGIPAGSPITRRLFSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45811; Mature: 45811
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPEEAAEAMNRPERDEELPFIEP CCCCEEEECCCCHHHHCCEEEEECCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHH VRQPVRREPAAPVAAAPAAAADAARVEPTFGGAGSGAAPADTPADLQAEATGVDTSAEST HHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC EPVAGEEAVPAATHEAAAEPAEPTEPVMPAATTVSSAPPAIVDRRIDCIVPIRLNGPLPG CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCEEEEEEEECCCCCC DKILPVAQRLRRAGSKPVHIEGKPEGGQWELLQNGVRYEELRAAAQLANRSGALNELEFS CHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHH EFVTGVQQFADAIDGAPEFPDMMETVAMARELDAFAAQCDAQLSINVMSDGAPWSANYVQ HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH AVASQDGLLLSRDGTRFVKLDAKQNPVFMLQFGDTNFLRDDLTYKGGNMITLVLDVPVAE HHHCCCCEEEECCCCEEEEEECCCCCEEEEEECCCCHHHCCCEECCCCEEEEEEECCCCC EDILPFRLMCDYAKSLSERIGARVVDDSRRPLPESTLVAIDQQLMKLYAKLEEAGIPAGS CCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC PITRRLFSQ HHHHHHHCC >Mature Secondary Structure MDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPEEAAEAMNRPERDEELPFIEP CCCCEEEECCCCHHHHCCEEEEECCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHH VRQPVRREPAAPVAAAPAAAADAARVEPTFGGAGSGAAPADTPADLQAEATGVDTSAEST HHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC EPVAGEEAVPAATHEAAAEPAEPTEPVMPAATTVSSAPPAIVDRRIDCIVPIRLNGPLPG CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCEEEEEEEECCCCCC DKILPVAQRLRRAGSKPVHIEGKPEGGQWELLQNGVRYEELRAAAQLANRSGALNELEFS CHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHH EFVTGVQQFADAIDGAPEFPDMMETVAMARELDAFAAQCDAQLSINVMSDGAPWSANYVQ HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH AVASQDGLLLSRDGTRFVKLDAKQNPVFMLQFGDTNFLRDDLTYKGGNMITLVLDVPVAE HHHCCCCEEEECCCCEEEEEECCCCCEEEEEECCCCHHHCCCEECCCCEEEEEEECCCCC EDILPFRLMCDYAKSLSERIGARVVDDSRRPLPESTLVAIDQQLMKLYAKLEEAGIPAGS CCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC PITRRLFSQ HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA