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The map label for this gene is yjiR [C]

Identifier: 116690005

GI number: 116690005

Start: 2200618

End: 2201964

Strand: Reverse

Name: yjiR [C]

Synonym: Bcen2424_1984

Alternate gene names: 116690005

Gene position: 2201964-2200618 (Counterclockwise)

Preceding gene: 116690010

Following gene: 116690003

Centisome position: 63.2

GC content: 66.3

Gene sequence:

>1347_bases
ATGCTCCTGCGATCCCCCTGGTCACCACGGCTTGCCGACATCGATGCGAATACCGCCGAGCGGTTGGTGCTCGCCCTGGC
CGACGACATCGTCGAAGGGCGGCTGACGGGAGGCGACCGACTGCCCGCTCATCGCGATCTCGCGTTGAAACTGGGGATCG
GGCTTGGCACGGTGACGAAGGCTTATGCCGCGCTTGAACGGCGAGGCCTGACGCGCAGCATCAAGGGGCGCGGAACCTTT
GTGGCGATCCGCCAGGCGCACCATGATCGCCAGATCGACCTTTCGTCCAATGTGCCGCCAGCCATGCTCGACGCGCGCTT
GCTGGCGCGAACACTGACGGGGATCGCACGCAAGATCGATGCGGACCATCTCAATCTCTATGCACCGGCCGCCGGGCATA
TGGAGCACCGACGTGTGCTGGCCCGCTGGCTCGAAACGCTGGGCCTGATGGTGGAACCGTCGCATCTGGTGCTCACGAGC
GGCGCCCGCCAGGCGCTGTCATTGGCCTTCGATCTTGCGTGCGGCTCGCAAGGGCTGCTTCTGACCGAGCGGATCACCTA
TCCGGGCGCGATCGCGCTGGCTCGGCGCAACGGATATCGGATGCGCGGCATCGAGACCGACGCGCAAGGGATGGCGCCGG
AGGCACTGGCGGACGCACTCGACGGCGCCGCATCGACCGGCAACCAGGCGGTCTATCTCACACCGACGCTACACAATCCG
ACCACCGCGACAATGAGCACGGAACGCAGGCAGGCCATCGTGGATATTTGCCGCCGGGCGGGCGCGTGGATCATCGAGGA
CGGCGTCTATGCGCCGGCCGAATCGGCTTCGCCGCCGCTTGCGGCGTTGGCGCCCGAGATCACCTTTCATGTGAACGGGC
TGTCCAAATCGCTTGGCCCCGGTTTGCAGATCGGCGTGCTCGCACTGCCGGTCGGATTCGACGATGCCGCGGAAGACGCG
CTGCGGGACCTGCCGATGGCGCCGTCGCCGCTCTCTTGCGCAGTGATCGAGGAATGGCTGGCCGCCGACGTCATCTCATC
GATCCAGCGGGACCTGCACCATGAGGCGCGGCGTCGATCCAGTCTGGCCATCGCGCTGCTCGGCGCGGGCGAACTGGTCT
CGCATCCCGGCGCCTACAACGCGTGGCTGCCGATGGAGCGTGACGCCGCCATTCGTTTCGCCTCCGCTGCCGCGGCGATG
CGTATCAAGTTGACTCCTCCGGAATCCATGATGGTGAACCCGGAAGATCGGGCGAGCGGGATTCGACTTTGCCTCGGCGG
CCCGTCGTTCGACGATCTGACGGAAGCGCTGACACTGCTGGCCGGGCTGATGAAGCAGCGTGCCTGA

Upstream 100 bases:

>100_bases
CGCCTCCAGAAATGCATGACTTCATCCGATCACATCGCGCATGTTACGCTTGTTGTTTTCATAAATAGTGTCACGTGACA
CTAATATCTGGGCGGCAAAC

Downstream 100 bases:

>100_bases
CGCTGCCGGGGTACAAGAAACGGCTTGGATGTTGCCAAGCCGTTTTGCGTTTACACAGTGCGTGAATTGCTCACGCGTGC
GCGCGCACGAGCGAACGCAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MLLRSPWSPRLADIDANTAERLVLALADDIVEGRLTGGDRLPAHRDLALKLGIGLGTVTKAYAALERRGLTRSIKGRGTF
VAIRQAHHDRQIDLSSNVPPAMLDARLLARTLTGIARKIDADHLNLYAPAAGHMEHRRVLARWLETLGLMVEPSHLVLTS
GARQALSLAFDLACGSQGLLLTERITYPGAIALARRNGYRMRGIETDAQGMAPEALADALDGAASTGNQAVYLTPTLHNP
TTATMSTERRQAIVDICRRAGAWIIEDGVYAPAESASPPLAALAPEITFHVNGLSKSLGPGLQIGVLALPVGFDDAAEDA
LRDLPMAPSPLSCAVIEEWLAADVISSIQRDLHHEARRRSSLAIALLGAGELVSHPGAYNAWLPMERDAAIRFASAAAAM
RIKLTPPESMMVNPEDRASGIRLCLGGPSFDDLTEALTLLAGLMKQRA

Sequences:

>Translated_448_residues
MLLRSPWSPRLADIDANTAERLVLALADDIVEGRLTGGDRLPAHRDLALKLGIGLGTVTKAYAALERRGLTRSIKGRGTF
VAIRQAHHDRQIDLSSNVPPAMLDARLLARTLTGIARKIDADHLNLYAPAAGHMEHRRVLARWLETLGLMVEPSHLVLTS
GARQALSLAFDLACGSQGLLLTERITYPGAIALARRNGYRMRGIETDAQGMAPEALADALDGAASTGNQAVYLTPTLHNP
TTATMSTERRQAIVDICRRAGAWIIEDGVYAPAESASPPLAALAPEITFHVNGLSKSLGPGLQIGVLALPVGFDDAAEDA
LRDLPMAPSPLSCAVIEEWLAADVISSIQRDLHHEARRRSSLAIALLGAGELVSHPGAYNAWLPMERDAAIRFASAAAAM
RIKLTPPESMMVNPEDRASGIRLCLGGPSFDDLTEALTLLAGLMKQRA
>Mature_448_residues
MLLRSPWSPRLADIDANTAERLVLALADDIVEGRLTGGDRLPAHRDLALKLGIGLGTVTKAYAALERRGLTRSIKGRGTF
VAIRQAHHDRQIDLSSNVPPAMLDARLLARTLTGIARKIDADHLNLYAPAAGHMEHRRVLARWLETLGLMVEPSHLVLTS
GARQALSLAFDLACGSQGLLLTERITYPGAIALARRNGYRMRGIETDAQGMAPEALADALDGAASTGNQAVYLTPTLHNP
TTATMSTERRQAIVDICRRAGAWIIEDGVYAPAESASPPLAALAPEITFHVNGLSKSLGPGLQIGVLALPVGFDDAAEDA
LRDLPMAPSPLSCAVIEEWLAADVISSIQRDLHHEARRRSSLAIALLGAGELVSHPGAYNAWLPMERDAAIRFASAAAAM
RIKLTPPESMMVNPEDRASGIRLCLGGPSFDDLTEALTLLAGLMKQRA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=325, Percent_Identity=28, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787710, Length=324, Percent_Identity=25, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 47872; Mature: 47872

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRSPWSPRLADIDANTAERLVLALADDIVEGRLTGGDRLPAHRDLALKLGIGLGTVTK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHH
AYAALERRGLTRSIKGRGTFVAIRQAHHDRQIDLSSNVPPAMLDARLLARTLTGIARKID
HHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
ADHLNLYAPAAGHMEHRRVLARWLETLGLMVEPSHLVLTSGARQALSLAFDLACGSQGLL
CCCEEEECCCCCCHHHHHHHHHHHHHHCCEECCCEEEEECCHHHHHHHHHHHCCCCCCCE
LTERITYPGAIALARRNGYRMRGIETDAQGMAPEALADALDGAASTGNQAVYLTPTLHNP
EEEECCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
TTATMSTERRQAIVDICRRAGAWIIEDGVYAPAESASPPLAALAPEITFHVNGLSKSLGP
CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHCCCEEEEECCHHHHCCC
GLQIGVLALPVGFDDAAEDALRDLPMAPSPLSCAVIEEWLAADVISSIQRDLHHEARRRS
CCEEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLAIALLGAGELVSHPGAYNAWLPMERDAAIRFASAAAAMRIKLTPPESMMVNPEDRASG
CEEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHEECCEEEEEEECCCCCEEECCCCCCCC
IRLCLGGPSFDDLTEALTLLAGLMKQRA
EEEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLRSPWSPRLADIDANTAERLVLALADDIVEGRLTGGDRLPAHRDLALKLGIGLGTVTK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHH
AYAALERRGLTRSIKGRGTFVAIRQAHHDRQIDLSSNVPPAMLDARLLARTLTGIARKID
HHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
ADHLNLYAPAAGHMEHRRVLARWLETLGLMVEPSHLVLTSGARQALSLAFDLACGSQGLL
CCCEEEECCCCCCHHHHHHHHHHHHHHCCEECCCEEEEECCHHHHHHHHHHHCCCCCCCE
LTERITYPGAIALARRNGYRMRGIETDAQGMAPEALADALDGAASTGNQAVYLTPTLHNP
EEEECCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
TTATMSTERRQAIVDICRRAGAWIIEDGVYAPAESASPPLAALAPEITFHVNGLSKSLGP
CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHCCCEEEEECCHHHHCCC
GLQIGVLALPVGFDDAAEDALRDLPMAPSPLSCAVIEEWLAADVISSIQRDLHHEARRRS
CCEEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLAIALLGAGELVSHPGAYNAWLPMERDAAIRFASAAAAMRIKLTPPESMMVNPEDRASG
CEEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHEECCEEEEEEECCCCCEEECCCCCCCC
IRLCLGGPSFDDLTEALTLLAGLMKQRA
EEEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]