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The map label for this gene is 116690003

Identifier: 116690003

GI number: 116690003

Start: 2199182

End: 2199805

Strand: Reverse

Name: 116690003

Synonym: Bcen2424_1982

Alternate gene names: NA

Gene position: 2199805-2199182 (Counterclockwise)

Preceding gene: 116690005

Following gene: 116689991

Centisome position: 63.14

GC content: 62.98

Gene sequence:

>624_bases
ATGAAATTTCGCTCCACGCCAGTCGGACATGCTGCCGTGACTCAACTGACGCTACCCGGATTCGATGCGCCGCCGCCGGC
TCCCGTGCACCGCTTCTTTTTCGCCGTGATGCCAGACACGGCCACGGCCGCGCGCATTGCCGGTGTCGCCAAAAGCTTGC
AGCAGGAGAAGGACAGCCCGGTGGACACCGAGCGTCTGCACATCACGCTGGGCTCGCTAGGCGACTTCGCTTACGTGCCG
GGCGCTACGCTTGCACGAGCCCGCGCGGTCGCGGATCGCATGGAAGTGCCGTCTTTCTCGGTGAGGTTCGACAAGATCAT
CAGCTTCAACAGGCGGTCCGGTCGTCAGCCGCTGGTGCTGACGGGGAAGGCCGGTCTGGAAGACTTGATCGATTTTCGGC
GGCAGTTGCGAGACGCGTTGAAAAGGGTAGGCGTGCCTGTTTTCCCCTCGAGTTTCACCCCGCACGTGACGCTGCTGTAT
GGCGCACAGAGGCCCGATGAGTATCGGATCGAGCCGATTACCTGGACCGTGTTCGACTTCGTCCTGATCGATAGCTGGCT
CGGCAAGTCGCACTACGACGTATTGGGGCGCTGGCCGCTGAGGACCGGCAGCGCCTCGGGGTGA

Upstream 100 bases:

>100_bases
AGGGTGTCGAGTGTGGCCGAGAGGGTAGCATCTTCAGGCGTGTGAACGGCGGATTCGTCTAGCGGTGAGCAGCGAGCGGG
CCGGCTACCGATTGACGATA

Downstream 100 bases:

>100_bases
TCGCGATGCCGCAAGTGCGGTGCCGTTTCAGCGCATCCGGACCGGGCCGGTACAGCGTCCCGTTCTCGTCGGGACGCCGG
CTCAGTCCCGATCGCCACCG

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; Phosphoesterase HXTX; Ligase Protein; 2-5' RNA Ligase-Like Protein; 2h Phosphoesterase; Ligase

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKFRSTPVGHAAVTQLTLPGFDAPPPAPVHRFFFAVMPDTATAARIAGVAKSLQQEKDSPVDTERLHITLGSLGDFAYVP
GATLARARAVADRMEVPSFSVRFDKIISFNRRSGRQPLVLTGKAGLEDLIDFRRQLRDALKRVGVPVFPSSFTPHVTLLY
GAQRPDEYRIEPITWTVFDFVLIDSWLGKSHYDVLGRWPLRTGSASG

Sequences:

>Translated_207_residues
MKFRSTPVGHAAVTQLTLPGFDAPPPAPVHRFFFAVMPDTATAARIAGVAKSLQQEKDSPVDTERLHITLGSLGDFAYVP
GATLARARAVADRMEVPSFSVRFDKIISFNRRSGRQPLVLTGKAGLEDLIDFRRQLRDALKRVGVPVFPSSFTPHVTLLY
GAQRPDEYRIEPITWTVFDFVLIDSWLGKSHYDVLGRWPLRTGSASG
>Mature_207_residues
MKFRSTPVGHAAVTQLTLPGFDAPPPAPVHRFFFAVMPDTATAARIAGVAKSLQQEKDSPVDTERLHITLGSLGDFAYVP
GATLARARAVADRMEVPSFSVRFDKIISFNRRSGRQPLVLTGKAGLEDLIDFRRQLRDALKRVGVPVFPSSFTPHVTLLY
GAQRPDEYRIEPITWTVFDFVLIDSWLGKSHYDVLGRWPLRTGSASG

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22906; Mature: 22906

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFRSTPVGHAAVTQLTLPGFDAPPPAPVHRFFFAVMPDTATAARIAGVAKSLQQEKDSP
CCCCCCCCCCHHEEEEECCCCCCCCCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCC
VDTERLHITLGSLGDFAYVPGATLARARAVADRMEVPSFSVRFDKIISFNRRSGRQPLVL
CCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEE
TGKAGLEDLIDFRRQLRDALKRVGVPVFPSSFTPHVTLLYGAQRPDEYRIEPITWTVFDF
ECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEECCCHHHHHHH
VLIDSWLGKSHYDVLGRWPLRTGSASG
HHHHHHHCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKFRSTPVGHAAVTQLTLPGFDAPPPAPVHRFFFAVMPDTATAARIAGVAKSLQQEKDSP
CCCCCCCCCCHHEEEEECCCCCCCCCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCC
VDTERLHITLGSLGDFAYVPGATLARARAVADRMEVPSFSVRFDKIISFNRRSGRQPLVL
CCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEE
TGKAGLEDLIDFRRQLRDALKRVGVPVFPSSFTPHVTLLYGAQRPDEYRIEPITWTVFDF
ECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEECCCHHHHHHH
VLIDSWLGKSHYDVLGRWPLRTGSASG
HHHHHHHCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA