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The map label for this gene is yfdE [H]

Identifier: 116688960

GI number: 116688960

Start: 1045722

End: 1046945

Strand: Direct

Name: yfdE [H]

Synonym: Bcen2424_0937

Alternate gene names: 116688960

Gene position: 1045722-1046945 (Clockwise)

Preceding gene: 116688959

Following gene: 116688961

Centisome position: 30.02

GC content: 69.93

Gene sequence:

>1224_bases
ATGCAGGCATTAACGGGAATCAAGGTCGTCGATCTGAGTCGCGCGCTGTCGGGGCCGTTCTGCTCGATGGTGCTCGCGGA
TCTCGGCGCCGACGTGATCAAGGTCGAATCGGGGCCGCACGGCGACATGAGCCGCGCGTGGGGGCCGTTCGATCGCGGCG
TGAGCACGTACTACCTGTCCTGCAACCGCAACAAGCGCGGCATCTGCGTGGACTTCCGGCAGCCGGCCGGCCTCGACGTC
GTGCGGCGCCTGATCGCGCAGGCCGACGTCGTGATCGAGAATTTCAAGGCGGGCACGATGGACGCGATGGGGCTCGGCTA
TGCTGAGCTGAGCGCGGGCGATCCGCGGCTCGTGATGGGCAGCGTCACCGCGTTCGGCTCGCGCGGCCCGCTGCGCGACT
GGCCGGGCTTCGACCAGATCGCGCAGGGCTATGCGGGGCTGATGAGCCTCACCGGTTTCCCGGATGGCGAGCCGACCCGC
ACGGGCACCGCGATCGGCGATCTCAGCTCGGGGATGTGGGTCGCGACCGGCGTGATGGCCGCGCTGTTCGAGCGCGAGCG
CACCGGGCGCGGCCAGCATGTCGGCACGTCGCTGCTCGAAAGCCTCGTTGCGCTGCTGAGCGTGCATGGGCAACGCTACC
TGAGCCTCGGCGACGTGCCACGCCGTACCGGCAATGCGCATGCGGTGATCGCGCCGTACGGCGTGTTCGAGACGGCCGAC
GGCCCGCTCAACCTCGCGCCGATCACGACCGACATGTGGCTGCGGCTGTGCCAGTTGCTGGATCTGCCCGCGCTGCCCAA
CGATCCGCGCTTCGCGACCAACGATGCGCGCGTCGCGCATCGCGATGAACTCAAGGCGCTGCTCGAAAGCCGGTTGCGCA
CGCGCGGCAAGCGCGAATGGACGCAACGGTTCGTCGAGGCCGGGCTGCCGGCCGGCCCGATCCATACGCTCGACGAAGTG
TTCGACGATCCGCAGCTCGCGCATTGCGGGCTGGTCGAGCCGGTCGCGCATCCGACGCTCGGTACGCTGCGCCAGGTCGT
CACGCCGCTCGGCGGGATGGACGACGACGTGCCGGCGCCGCGCACCCGCCATGCGCCGCCGCTGCTCGGCGAGCATACGG
TCGATGTGCTGCGCGAAGCCGGCTACGGCGACGACGCGATCGACGCACTGCTGGCCGGGCGCGCGATCTTCCAGGCCGAT
GCGGTGGCGGAGGCCGTGCAATGA

Upstream 100 bases:

>100_bases
TCGCGGTCGAGACGCGACATCAGACGCTGCCCGAATGAGCGAAATGCCGCAGTCGTTCGGAAACAAGACGAGACATACCC
ATCAATATCAGGAGTCCGGA

Downstream 100 bases:

>100_bases
CCGACATGACGAAACACGACGGAGCGTCGAGCGTGACGGTCGATTGGATCGGCGAGCGGATCGCGCGCGTGCGGTTCGGG
AATCCGGCGCGACGGCATGC

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MQALTGIKVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLSCNRNKRGICVDFRQPAGLDV
VRRLIAQADVVIENFKAGTMDAMGLGYAELSAGDPRLVMGSVTAFGSRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTR
TGTAIGDLSSGMWVATGVMAALFERERTGRGQHVGTSLLESLVALLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
GPLNLAPITTDMWLRLCQLLDLPALPNDPRFATNDARVAHRDELKALLESRLRTRGKREWTQRFVEAGLPAGPIHTLDEV
FDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMDDDVPAPRTRHAPPLLGEHTVDVLREAGYGDDAIDALLAGRAIFQAD
AVAEAVQ

Sequences:

>Translated_407_residues
MQALTGIKVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLSCNRNKRGICVDFRQPAGLDV
VRRLIAQADVVIENFKAGTMDAMGLGYAELSAGDPRLVMGSVTAFGSRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTR
TGTAIGDLSSGMWVATGVMAALFERERTGRGQHVGTSLLESLVALLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
GPLNLAPITTDMWLRLCQLLDLPALPNDPRFATNDARVAHRDELKALLESRLRTRGKREWTQRFVEAGLPAGPIHTLDEV
FDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMDDDVPAPRTRHAPPLLGEHTVDVLREAGYGDDAIDALLAGRAIFQAD
AVAEAVQ
>Mature_407_residues
MQALTGIKVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLSCNRNKRGICVDFRQPAGLDV
VRRLIAQADVVIENFKAGTMDAMGLGYAELSAGDPRLVMGSVTAFGSRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTR
TGTAIGDLSSGMWVATGVMAALFERERTGRGQHVGTSLLESLVALLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
GPLNLAPITTDMWLRLCQLLDLPALPNDPRFATNDARVAHRDELKALLESRLRTRGKREWTQRFVEAGLPAGPIHTLDEV
FDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMDDDVPAPRTRHAPPLLGEHTVDVLREAGYGDDAIDALLAGRAIFQAD
AVAEAVQ

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=411, Percent_Identity=38.1995133819951, Blast_Score=300, Evalue=2e-81,
Organism=Homo sapiens, GI300863124, Length=437, Percent_Identity=36.1556064073227, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI300863126, Length=411, Percent_Identity=34.3065693430657, Blast_Score=241, Evalue=6e-64,
Organism=Homo sapiens, GI13376042, Length=437, Percent_Identity=32.9519450800915, Blast_Score=238, Evalue=6e-63,
Organism=Homo sapiens, GI42794625, Length=408, Percent_Identity=29.656862745098, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI266456254, Length=408, Percent_Identity=29.656862745098, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI266458393, Length=242, Percent_Identity=34.297520661157, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI266458397, Length=270, Percent_Identity=32.2222222222222, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI42822893, Length=176, Percent_Identity=32.9545454545455, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI266458395, Length=176, Percent_Identity=32.9545454545455, Blast_Score=89, Evalue=9e-18,
Organism=Escherichia coli, GI87082093, Length=322, Percent_Identity=36.9565217391304, Blast_Score=254, Evalue=7e-69,
Organism=Escherichia coli, GI1788717, Length=419, Percent_Identity=33.1742243436754, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1786222, Length=416, Percent_Identity=22.5961538461538, Blast_Score=86, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=327, Percent_Identity=24.1590214067278, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=324, Percent_Identity=24.3827160493827, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24648431, Length=391, Percent_Identity=41.1764705882353, Blast_Score=290, Evalue=9e-79,
Organism=Drosophila melanogaster, GI24585488, Length=320, Percent_Identity=27.5, Blast_Score=116, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43620; Mature: 43620

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALTGIKVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLS
CCCCCCCCCEEHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCHHCCCEEEEEE
CNRNKRGICVDFRQPAGLDVVRRLIAQADVVIENFKAGTMDAMGLGYAELSAGDPRLVMG
ECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCCCCCCEEEE
SVTAFGSRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTRTGTAIGDLSSGMWVATGVMA
CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHH
ALFERERTGRGQHVGTSLLESLVALLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCEEEECCCCEECCC
GPLNLAPITTDMWLRLCQLLDLPALPNDPRFATNDARVAHRDELKALLESRLRTRGKREW
CCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
TQRFVEAGLPAGPIHTLDEVFDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMDDDVPAP
HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCC
RTRHAPPLLGEHTVDVLREAGYGDDAIDALLAGRAIFQADAVAEAVQ
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQALTGIKVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLS
CCCCCCCCCEEHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCHHCCCEEEEEE
CNRNKRGICVDFRQPAGLDVVRRLIAQADVVIENFKAGTMDAMGLGYAELSAGDPRLVMG
ECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCCCCCCEEEE
SVTAFGSRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTRTGTAIGDLSSGMWVATGVMA
CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHH
ALFERERTGRGQHVGTSLLESLVALLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCEEEECCCCEECCC
GPLNLAPITTDMWLRLCQLLDLPALPNDPRFATNDARVAHRDELKALLESRLRTRGKREW
CCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
TQRFVEAGLPAGPIHTLDEVFDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMDDDVPAP
HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCC
RTRHAPPLLGEHTVDVLREAGYGDDAIDALLAGRAIFQADAVAEAVQ
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]