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The map label for this gene is exbD1 [H]

Identifier: 116688676

GI number: 116688676

Start: 725568

End: 726023

Strand: Direct

Name: exbD1 [H]

Synonym: Bcen2424_0653

Alternate gene names: 116688676

Gene position: 725568-726023 (Clockwise)

Preceding gene: 116688675

Following gene: 116688677

Centisome position: 20.83

GC content: 72.81

Gene sequence:

>456_bases
ATGGCATTCGGCGGGCTCGAGCACCACAAGACGTCCGCGCCGATGGCGGAGATCAACATGACGCCGCTGATCGACGTGAT
GCTCGTGCTGCTCGTCATCTTCATCATCACCGCGCCGCTGATGACGCACGCGATCCGGCTCGACCTGCCGAAGGTCGCGG
CGGGCGTCGCGCGCGACACACCGCAATCCGTCACACTGTCGATCGACGACGCGGGCAAGCTCTACTGGGACGACGCGCCC
GTGGCGCTCGATGCGCTGCCCGCGCGGTTCAAGGCCGCCGCCGCGGGCGCCGCGCCGCCCGAGCTGCGGCTGCGTGCGTC
GCGCGCGACGCGCTACGACGTGATCGCGCAGGTGATGGGCGCCGCGCAGGCCGCGGGTCTCACGCGGATCGGCTTCGTGA
CCGACGTGCCGCCGGCGGGTGCCGCGGCGCCCGCCGCCGCCGGCGCGAAACCCTGA

Upstream 100 bases:

>100_bases
CGTCCGGCAGCTCGCCGAGGAGCTCGACGGCTTCGCACGCGATCTGCACGTCTTCGTGTGCGCGCAGGGCGTCTGACGCG
CCGGCTCCGGAGGAACGATC

Downstream 100 bases:

>100_bases
CGCGCCGCCAGGCCGCCACGCCAACCGTCAGGCAAGTTCCCGCCCGTCGCCGGGGCGGGCCGCACGCCGCAAGACCGGCC
GGATGCGCGGGCGCTGACGG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDTPQSVTLSIDDAGKLYWDDAP
VALDALPARFKAAAAGAAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP

Sequences:

>Translated_151_residues
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDTPQSVTLSIDDAGKLYWDDAP
VALDALPARFKAAAAGAAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP
>Mature_150_residues
AFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDTPQSVTLSIDDAGKLYWDDAPV
ALDALPARFKAAAAGAAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=31.8840579710145, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15559; Mature: 15428

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDT
CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
PQSVTLSIDDAGKLYWDDAPVALDALPARFKAAAAGAAPPELRLRASRATRYDVIAQVMG
CCEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHH
AAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP
HHHHCCCEEECEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDT
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
PQSVTLSIDDAGKLYWDDAPVALDALPARFKAAAAGAAPPELRLRASRATRYDVIAQVMG
CCEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHH
AAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP
HHHHCCCEEECEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]