| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is trpD [H]
Identifier: 116688556
GI number: 116688556
Start: 592211
End: 593278
Strand: Reverse
Name: trpD [H]
Synonym: Bcen2424_0532
Alternate gene names: 116688556
Gene position: 593278-592211 (Counterclockwise)
Preceding gene: 116688557
Following gene: 116688555
Centisome position: 17.03
GC content: 66.29
Gene sequence:
>1068_bases ATGCCGCCGCACCGGCTGCCTGACGAGAGACGCACGATGACGATTACCCCGCAGGAAGCGCTGCAGCGCACGATCGAGCA CCGCGAGATCTTCCACGACGAAATGCTGCACCTGATGCGGCTGATCATGCGCGGCGACCTGTCGCCCGTGATGGCGGCCG CGATCATCACCGGGCTGCGCGTGAAGAAGGAGACGATCGGCGAGATCGCCGCCGCCGCGACCGTGATGCGCGAATTCGCG AATCACGTCGAGGTGCAGGACAATTCGAATTTCGTCGACATCGTCGGCACCGGCGGCGACGGCTCGCACACGTTCAACAT CTCGACCGCGTCGATGTTCGTCACGGCGGCCGCGGGCGCGAAGGTCGCGAAGCACGGCAACCGCGGCGTATCGAGCAAGT CCGGCAGCGCCGACGTACTCGAGGCGCTCGGCGTGAACATCGACCTGCAGTCGGAGCAAGTCGCCGCATCGATCGCCGAA ACCGGCATGGGCTTCATGTTCGCGCCGAACCATCACCCGGCGATGAAGAACATCGCGGCCGTGCGCCGCGAGCTCGGCGT GCGCACGATCTTCAACATCCTCGGCCCGCTGACCAATCCGGCCGGCGCACCGAACCAGCTGATGGGCGTTTTCCACCCCG ACCTCGTCGGCATCCAGGTGCGCGTGATGCAGCGTCTCGGCGCGCAGCACGTGCTCGTCGTGTACGGCAAGGACGGGATG GACGAGGTGTCGCTCGGCGCCGCGACGCTCGTCGGCGAATTGCGCGACGGCAAGGTGCACGAATACGAGATCCATCCGGA GGACTTCGGCCTGCAGATGGTGTCGAACCGCACGCTGAAGGTGGAAAATGCCGACGAATCGCGCACGATGCTGCTCGGCG CGCTGGACAACCAGCCGGGCGTCGCGCGCGAGATCGTCACGCTGAACGCGGGCACCGCGCTCTACGCGGCCAATATCGCC GAATCGATCGCGGACGGCATCCAGCTCGCCCGCGAAGCGATCGCGAGCGGCAAGGCCCGCGCGAAGGTCGACGAACTCGT GCGCTTCACGCAGCAATTCAAGCGCTGA
Upstream 100 bases:
>100_bases CTGCCGGTCGAAGGCGTGCAGTTCCACCCGGAATCGATTCTCTCGGAGCATGGCCATGCGCTGCTCGAGAATTTCCTGAA GCAGCATCGCGCGGCGGCCC
Downstream 100 bases:
>100_bases CCCTCTTACGAATCCAGCAGGAACCCCTATGAGCGACATTCTCGACCGAATCATCGCCGTCAAGCGCGAAGAAATCGCGG CGGCCCTGCGCAGCACGCCG
Product: anthranilate phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MPPHRLPDERRTMTITPQEALQRTIEHREIFHDEMLHLMRLIMRGDLSPVMAAAIITGLRVKKETIGEIAAAATVMREFA NHVEVQDNSNFVDIVGTGGDGSHTFNISTASMFVTAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQSEQVAASIAE TGMGFMFAPNHHPAMKNIAAVRRELGVRTIFNILGPLTNPAGAPNQLMGVFHPDLVGIQVRVMQRLGAQHVLVVYGKDGM DEVSLGAATLVGELRDGKVHEYEIHPEDFGLQMVSNRTLKVENADESRTMLLGALDNQPGVAREIVTLNAGTALYAANIA ESIADGIQLAREAIASGKARAKVDELVRFTQQFKR
Sequences:
>Translated_355_residues MPPHRLPDERRTMTITPQEALQRTIEHREIFHDEMLHLMRLIMRGDLSPVMAAAIITGLRVKKETIGEIAAAATVMREFA NHVEVQDNSNFVDIVGTGGDGSHTFNISTASMFVTAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQSEQVAASIAE TGMGFMFAPNHHPAMKNIAAVRRELGVRTIFNILGPLTNPAGAPNQLMGVFHPDLVGIQVRVMQRLGAQHVLVVYGKDGM DEVSLGAATLVGELRDGKVHEYEIHPEDFGLQMVSNRTLKVENADESRTMLLGALDNQPGVAREIVTLNAGTALYAANIA ESIADGIQLAREAIASGKARAKVDELVRFTQQFKR >Mature_354_residues PPHRLPDERRTMTITPQEALQRTIEHREIFHDEMLHLMRLIMRGDLSPVMAAAIITGLRVKKETIGEIAAAATVMREFAN HVEVQDNSNFVDIVGTGGDGSHTFNISTASMFVTAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQSEQVAASIAET GMGFMFAPNHHPAMKNIAAVRRELGVRTIFNILGPLTNPAGAPNQLMGVFHPDLVGIQVRVMQRLGAQHVLVVYGKDGMD EVSLGAATLVGELRDGKVHEYEIHPEDFGLQMVSNRTLKVENADESRTMLLGALDNQPGVAREIVTLNAGTALYAANIAE SIADGIQLAREAIASGKARAKVDELVRFTQQFKR
Specific function: Tryptophan biosynthesis; first step. Tryptophan biosynthesis; second step. [C]
COG id: COG0547
COG function: function code E; Anthranilate phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate phosphoribosyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1787517, Length=331, Percent_Identity=40.1812688821752, Blast_Score=206, Evalue=2e-54, Organism=Saccharomyces cerevisiae, GI6320561, Length=356, Percent_Identity=26.9662921348315, Blast_Score=120, Evalue=4e-28,
Paralogues:
None
Copy number: 945 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 900 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005940 - InterPro: IPR000312 - InterPro: IPR017459 - InterPro: IPR020072 [H]
Pfam domain/function: PF02885 Glycos_trans_3N; PF00591 Glycos_transf_3 [H]
EC number: =2.4.2.18 [H]
Molecular weight: Translated: 38308; Mature: 38177
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPHRLPDERRTMTITPQEALQRTIEHREIFHDEMLHLMRLIMRGDLSPVMAAAIITGLR CCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH VKKETIGEIAAAATVMREFANHVEVQDNSNFVDIVGTGGDGSHTFNISTASMFVTAAAGA HHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHCCC KVAKHGNRGVSSKSGSADVLEALGVNIDLQSEQVAASIAETGMGFMFAPNHHPAMKNIAA HHHHCCCCCCCCCCCCHHHHHHHCCCCEECHHHHHHHHHHHCCCEEECCCCCHHHHHHHH VRRELGVRTIFNILGPLTNPAGAPNQLMGVFHPDLVGIQVRVMQRLGAQHVLVVYGKDGM HHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC DEVSLGAATLVGELRDGKVHEYEIHPEDFGLQMVSNRTLKVENADESRTMLLGALDNQPG CHHHHHHHHHHHHHCCCCEEEEEECCHHCCCEEECCCEEEEECCCCCCEEEEEECCCCCC VAREIVTLNAGTALYAANIAESIADGIQLAREAIASGKARAKVDELVRFTQQFKR CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure PPHRLPDERRTMTITPQEALQRTIEHREIFHDEMLHLMRLIMRGDLSPVMAAAIITGLR CCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH VKKETIGEIAAAATVMREFANHVEVQDNSNFVDIVGTGGDGSHTFNISTASMFVTAAAGA HHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHCCC KVAKHGNRGVSSKSGSADVLEALGVNIDLQSEQVAASIAETGMGFMFAPNHHPAMKNIAA HHHHCCCCCCCCCCCCHHHHHHHCCCCEECHHHHHHHHHHHCCCEEECCCCCHHHHHHHH VRRELGVRTIFNILGPLTNPAGAPNQLMGVFHPDLVGIQVRVMQRLGAQHVLVVYGKDGM HHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC DEVSLGAATLVGELRDGKVHEYEIHPEDFGLQMVSNRTLKVENADESRTMLLGALDNQPG CHHHHHHHHHHHHHCCCCEEEEEECCHHCCCEEECCCEEEEECCCCCCEEEEEECCCCCC VAREIVTLNAGTALYAANIAESIADGIQLAREAIASGKARAKVDELVRFTQQFKR CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA