| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is gph [C]
Identifier: 116688540
GI number: 116688540
Start: 574563
End: 575186
Strand: Direct
Name: gph [C]
Synonym: Bcen2424_0516
Alternate gene names: 116688540
Gene position: 574563-575186 (Clockwise)
Preceding gene: 116688539
Following gene: 116688544
Centisome position: 16.49
GC content: 66.67
Gene sequence:
>624_bases ATGACGATCAAGGCAGTGGTGTTCGATTTCGGCGGGGTGCTGATCGACTGGAGCCCCGAGTACCTTTACCGCGAACTGAT TCCCGACGCCGCCGAGCGTCGCTGGTTCCTCACGCACGTGTGCGCGATGGACTGGGTCGTCCGCCAGGACGGCGGGCAGA CGATCGAGGAAGGCACGGCCGAACTCGTCGCGAAGTTTCCGGAGCACGAAGCGCTGATCCGCGCGTTCTATGCGCGCTGG CACGAAATGATCGGCGGCGTGCTCGAAGAGGGCGCGGCGCTCGTCGACCGGCTGGAAGCGCAGGGGATGCCGCTGTTCGG GCTGACGAACTGGTCCGCGCAGACGTTTCCGTATGCATGGGACAACTTCCCGGTGCTGCGCCGCTTCAAGGACATCGTCG TGTCGGGCCGCGTGAAGCTCGTGAAACCCGATCCGGCGATCTACCGCGAGATGCATGCGCGGATCGAGCCGCACCTGCCC GGCATCGCGCCGCACGAGCTCGTGTTCATCGACGACAACGCGCACAACGCGGCGGCCGCGACGGCGCTCGGCTGGCACGG CATTCATCATACGAGCGCGGCGGCGACCGAAGCGCGGCTGCGCGAACTGGGCGCGCTCGTGTAA
Upstream 100 bases:
>100_bases AGATCGTCGCGCACCATCACTTCATCTGGAACAACAATTCGCTGTCGGGCAACGCGGTGACGCCGCGTCCGCTCGCGGAC GTGCTCGCTACGGAGTTTGC
Downstream 100 bases:
>100_bases GCGGCGGGGAAGCCACGCGGGATAAAAAAAGCGAGCCAAGGGCTCGCTTTTTCGTTGTGCTGTTCGGAAGTGGCCCGCTT CGGCATCCGGCCCCGCGTGA
Product: HAD family hydrolase
Products: Glycolate; Phosphate [C]
Alternate protein names: HAD-Superfamily Hydrolase; Hydrolase; Alpha Beta Hydrolase; Haloacid Dehalogenase-Like Hydrolase; HAD Superfamily Hydrolase; HAD Hydrolase Family IA; 2-Haloacid Dehalogenase; Hydrolase Haloacid Dehalogenase-Like Family Protein; Haloacid Dehalogenase Superfamily Protein; Hydrolase Protein; Haloacid Dehalogenase-Like Family Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; Haloacid Dehalogenase-Like Hydrolase Protein; Hydrolase Protein Haloacid Dehalogenase-Like Family; HAD Family Phosphatase; HAD Hydrolase Superfamily Protein
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MTIKAVVFDFGGVLIDWSPEYLYRELIPDAAERRWFLTHVCAMDWVVRQDGGQTIEEGTAELVAKFPEHEALIRAFYARW HEMIGGVLEEGAALVDRLEAQGMPLFGLTNWSAQTFPYAWDNFPVLRRFKDIVVSGRVKLVKPDPAIYREMHARIEPHLP GIAPHELVFIDDNAHNAAAATALGWHGIHHTSAAATEARLRELGALV
Sequences:
>Translated_207_residues MTIKAVVFDFGGVLIDWSPEYLYRELIPDAAERRWFLTHVCAMDWVVRQDGGQTIEEGTAELVAKFPEHEALIRAFYARW HEMIGGVLEEGAALVDRLEAQGMPLFGLTNWSAQTFPYAWDNFPVLRRFKDIVVSGRVKLVKPDPAIYREMHARIEPHLP GIAPHELVFIDDNAHNAAAATALGWHGIHHTSAAATEARLRELGALV >Mature_206_residues TIKAVVFDFGGVLIDWSPEYLYRELIPDAAERRWFLTHVCAMDWVVRQDGGQTIEEGTAELVAKFPEHEALIRAFYARWH EMIGGVLEEGAALVDRLEAQGMPLFGLTNWSAQTFPYAWDNFPVLRRFKDIVVSGRVKLVKPDPAIYREMHARIEPHLPG IAPHELVFIDDNAHNAAAATALGWHGIHHTSAAATEARLRELGALV
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.1.3.18 [C]
Molecular weight: Translated: 23264; Mature: 23133
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKAVVFDFGGVLIDWSPEYLYRELIPDAAERRWFLTHVCAMDWVVRQDGGQTIEEGTA CCEEEEEEECCCEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH ELVAKFPEHEALIRAFYARWHEMIGGVLEEGAALVDRLEAQGMPLFGLTNWSAQTFPYAW HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC DNFPVLRRFKDIVVSGRVKLVKPDPAIYREMHARIEPHLPGIAPHELVFIDDNAHNAAAA CCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHH TALGWHGIHHTSAAATEARLRELGALV HHHHHCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TIKAVVFDFGGVLIDWSPEYLYRELIPDAAERRWFLTHVCAMDWVVRQDGGQTIEEGTA CEEEEEEECCCEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH ELVAKFPEHEALIRAFYARWHEMIGGVLEEGAALVDRLEAQGMPLFGLTNWSAQTFPYAW HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC DNFPVLRRFKDIVVSGRVKLVKPDPAIYREMHARIEPHLPGIAPHELVFIDDNAHNAAAA CCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHH TALGWHGIHHTSAAATEARLRELGALV HHHHHCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Mg2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.57 {phosphoglycolate}} [C]
Substrates: D-Glycerate 2-phosphatelyc; H2O [C]
Specific reaction: D-Glycerate 2-phosphatelyc + H2O --> Glycolate + Phosphate [C]
General reaction: Additional information:
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA