| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688503
Identifier: 116688503
GI number: 116688503
Start: 534308
End: 536569
Strand: Direct
Name: 116688503
Synonym: Bcen2424_0479
Alternate gene names: NA
Gene position: 534308-536569 (Clockwise)
Preceding gene: 116688502
Following gene: 116688505
Centisome position: 15.34
GC content: 59.95
Gene sequence:
>2262_bases ATGGCCGGGGCTAACGATCGAAACGCCATTCGACTCGATCCGGACGACGCTACGCCGCAGAGCGTGCGAATGGCAGTCGA CAAGATGGCGACCGCCAACTATCCAAAGGGCGACTGTCTGCCGTGCGGGGCAACGATCCGTATCGGCGTATTCTTCGATG CGTTCGGTCGCAGCAGGGACGAAGACGATCCGGACAGCGGACTGTACTCGAACATCTCGCGTCTTTTCGATGCGCACCGC ACCAACCTGGACGTCGATCGTCCCGTGAATCAGTTCTGGTTCCGTCTCTACTATTCGGGCCTCGGGACGGATCTCAACGC GGATGCCAAGTCGAACGACTGGCTCAATGCAGGCCTAGCCGCGGGGAAAATGGTCGGCAAGAAGGTGCTCGCCGCAACGA AAGGCGTTGCGGAGTCAGTCGCCCGTGTGAACCAGCCGATCAAGCAACTGGACGTGAAAGGTCGCGTGACGACGGCAACC AAGCAGTCCGCCTCGGAGTTCTCGTTTCGGCCGATGCTGAATGCTTTCAACGACTTCAAGAAGGACATCCAGAACATCCC CCGTACCGCGCGCCGCATCGCGAACGTACTGGACGCGTCGCCGGAGCGAATCTGGGAGCGCACGAAGGCAGGCGGCATCG CGGTGTTCCGGAATGCAAAGAACGACGCGAAGCGCAATCCGCTCAAGATCGTGCAATCGACAGTCCGTCAGGTCATTACG GGAATCGCGATCGAAAACGTACCGATCGTGCGCGATGCGCAGGTGATGAGCGCGTACTTCGGCACCGGCGTCGATTCGCG GCTCGTTGCCGCGAAGGACCAGTTGGAAAAAGCGGTCGAGGCGGTCAAGGGGCAGGCGTCGAAGATTCGAAAGATCGAAG TATCGGTGTTTGGTGCCGATCGTGGTTGCGTGCTGGCACGCGCGTTCGTCAACGATCTGGCGACCAAGTACAAGCGTCGC GATGATCAGGATCTTGCGCTCAACGGCATTTCGCTCGAAATAAAGTTCGTCGGTCTACTGGACGCGGTGTCGTCGATCAT GTCGGAAGAGGCCGGAGAGATTATCGGTATCCTGCCGTTTCTCGGAACCATCAAGCCGAATTACAAGGACCGGTCGCTCG CCGTGCCTGCAAGTGTGCAGCGATGCGTGCATTTCGCCGCCGCTCACGAGATGCGCATGTACCAGCGCCTCGACAGCCTG GAAAAGACCCGTGCCGAGCAACGGCTCTATCCGGGAACGAGCAGCGACATCGCGGGCGGTTCGTTGCATGGCTCGCTGGG CTTCAATGCGGAGCTGATGCGTATTCCGCTCAGGGACATGCTGTTCGAAGCGCTCAAGGCCGGTAGTGCGCTTCTCGACA TGGAAACGCTGGCCAAGCGGCGGCCTGACGTATTCAGCCGTTTCTCGATTGCGACGCCGATCACCTACGACGGCAAGCAG TACAGGATCAAGGCGCTTGTTGATGCGTACCGCAAGGTCGTTCCGGACACGCAAGGCGTGAACTTTCTGCCGCACGCGGA GGTATTCCTGCGCTGGATCGCCGTGCGATACCAGGATCCGGAATTCCGTCATTCCGTGACTGACCCGGCGACCGAATGGC GCAAGGACGTCGAAAGAGCCGACTACGATCGGCGCGACGCAAAGGCGAAGCTCGACTGGGCGATGATGGGCCGCCAGCGA ATGGACTCGCCCGAGATCCAGAAGCTTAAGCTCGCGAAGCAGGCGGCGGACAAGCGTTACAACGATTTATGGAAGGATGT CCCACCGAGCAACTACACGACGGTCTGGCAGCGTCTCGACAAGGAGGCGAAGGAGATGACCGGCAAGTGGGAGAAGATGC GGCCGGAATACGAGGCCGAGCAACAGCGCCGCTTCACGCAGTCGTTCAACAACAAGCCGACTTATACGCCACTGTTCCTT GCGCCCGCGTTTGCACGCCATGTCGAGCTGAACGAGGACGAGGTTGCGCTGGTCAGGGCCTGGGAGCAGGGGTATGCGGG GAAGAACCCGCTTCCGTCCGAGGTGATGGCGATGTTCGACATGCTCGTCCACGATACGTTGCTGACGAGTTGGCAGGATC ACGTGCTCGCGCCGTCACTGTACTTCAGGACACGGGACAAGGACGTGTTCGGAAAGACGGATTATGCGAAGGAAGACAAG CAGCGCAAGAGTGACGATCTCACTGCCGAACGGGTCGACCAAGCGAGCAAGCAGAGCCAGCAATGGGCGAGAGGCTATCA GGGGACGCCACCGACACATTGA
Upstream 100 bases:
>100_bases CCGACCGTTGTGAAGGAGCTTGGGCAGAACCGATTCCAGGCGGTTGCGGTCCCGTCGATTCCGGCGGGCCTGGTGCCGCC GCCACGTGAGGAGAATAGCC
Downstream 100 bases:
>100_bases CGTGCTTCAGCGGCGCGCAATCGCGTACCGCTGACACCCCGTCGCACTGGGGCGGATCATCCCGAGCTGCCCCCCCGCAA ACTCACTGCCCCACCCGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 753; Mature: 752
Protein sequence:
>753_residues MAGANDRNAIRLDPDDATPQSVRMAVDKMATANYPKGDCLPCGATIRIGVFFDAFGRSRDEDDPDSGLYSNISRLFDAHR TNLDVDRPVNQFWFRLYYSGLGTDLNADAKSNDWLNAGLAAGKMVGKKVLAATKGVAESVARVNQPIKQLDVKGRVTTAT KQSASEFSFRPMLNAFNDFKKDIQNIPRTARRIANVLDASPERIWERTKAGGIAVFRNAKNDAKRNPLKIVQSTVRQVIT GIAIENVPIVRDAQVMSAYFGTGVDSRLVAAKDQLEKAVEAVKGQASKIRKIEVSVFGADRGCVLARAFVNDLATKYKRR DDQDLALNGISLEIKFVGLLDAVSSIMSEEAGEIIGILPFLGTIKPNYKDRSLAVPASVQRCVHFAAAHEMRMYQRLDSL EKTRAEQRLYPGTSSDIAGGSLHGSLGFNAELMRIPLRDMLFEALKAGSALLDMETLAKRRPDVFSRFSIATPITYDGKQ YRIKALVDAYRKVVPDTQGVNFLPHAEVFLRWIAVRYQDPEFRHSVTDPATEWRKDVERADYDRRDAKAKLDWAMMGRQR MDSPEIQKLKLAKQAADKRYNDLWKDVPPSNYTTVWQRLDKEAKEMTGKWEKMRPEYEAEQQRRFTQSFNNKPTYTPLFL APAFARHVELNEDEVALVRAWEQGYAGKNPLPSEVMAMFDMLVHDTLLTSWQDHVLAPSLYFRTRDKDVFGKTDYAKEDK QRKSDDLTAERVDQASKQSQQWARGYQGTPPTH
Sequences:
>Translated_753_residues MAGANDRNAIRLDPDDATPQSVRMAVDKMATANYPKGDCLPCGATIRIGVFFDAFGRSRDEDDPDSGLYSNISRLFDAHR TNLDVDRPVNQFWFRLYYSGLGTDLNADAKSNDWLNAGLAAGKMVGKKVLAATKGVAESVARVNQPIKQLDVKGRVTTAT KQSASEFSFRPMLNAFNDFKKDIQNIPRTARRIANVLDASPERIWERTKAGGIAVFRNAKNDAKRNPLKIVQSTVRQVIT GIAIENVPIVRDAQVMSAYFGTGVDSRLVAAKDQLEKAVEAVKGQASKIRKIEVSVFGADRGCVLARAFVNDLATKYKRR DDQDLALNGISLEIKFVGLLDAVSSIMSEEAGEIIGILPFLGTIKPNYKDRSLAVPASVQRCVHFAAAHEMRMYQRLDSL EKTRAEQRLYPGTSSDIAGGSLHGSLGFNAELMRIPLRDMLFEALKAGSALLDMETLAKRRPDVFSRFSIATPITYDGKQ YRIKALVDAYRKVVPDTQGVNFLPHAEVFLRWIAVRYQDPEFRHSVTDPATEWRKDVERADYDRRDAKAKLDWAMMGRQR MDSPEIQKLKLAKQAADKRYNDLWKDVPPSNYTTVWQRLDKEAKEMTGKWEKMRPEYEAEQQRRFTQSFNNKPTYTPLFL APAFARHVELNEDEVALVRAWEQGYAGKNPLPSEVMAMFDMLVHDTLLTSWQDHVLAPSLYFRTRDKDVFGKTDYAKEDK QRKSDDLTAERVDQASKQSQQWARGYQGTPPTH >Mature_752_residues AGANDRNAIRLDPDDATPQSVRMAVDKMATANYPKGDCLPCGATIRIGVFFDAFGRSRDEDDPDSGLYSNISRLFDAHRT NLDVDRPVNQFWFRLYYSGLGTDLNADAKSNDWLNAGLAAGKMVGKKVLAATKGVAESVARVNQPIKQLDVKGRVTTATK QSASEFSFRPMLNAFNDFKKDIQNIPRTARRIANVLDASPERIWERTKAGGIAVFRNAKNDAKRNPLKIVQSTVRQVITG IAIENVPIVRDAQVMSAYFGTGVDSRLVAAKDQLEKAVEAVKGQASKIRKIEVSVFGADRGCVLARAFVNDLATKYKRRD DQDLALNGISLEIKFVGLLDAVSSIMSEEAGEIIGILPFLGTIKPNYKDRSLAVPASVQRCVHFAAAHEMRMYQRLDSLE KTRAEQRLYPGTSSDIAGGSLHGSLGFNAELMRIPLRDMLFEALKAGSALLDMETLAKRRPDVFSRFSIATPITYDGKQY RIKALVDAYRKVVPDTQGVNFLPHAEVFLRWIAVRYQDPEFRHSVTDPATEWRKDVERADYDRRDAKAKLDWAMMGRQRM DSPEIQKLKLAKQAADKRYNDLWKDVPPSNYTTVWQRLDKEAKEMTGKWEKMRPEYEAEQQRRFTQSFNNKPTYTPLFLA PAFARHVELNEDEVALVRAWEQGYAGKNPLPSEVMAMFDMLVHDTLLTSWQDHVLAPSLYFRTRDKDVFGKTDYAKEDKQ RKSDDLTAERVDQASKQSQQWARGYQGTPPTH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84902; Mature: 84771
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGANDRNAIRLDPDDATPQSVRMAVDKMATANYPKGDCLPCGATIRIGVFFDAFGRSRD CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHCCCCC EDDPDSGLYSNISRLFDAHRTNLDVDRPVNQFWFRLYYSGLGTDLNADAKSNDWLNAGLA CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH AGKMVGKKVLAATKGVAESVARVNQPIKQLDVKGRVTTATKQSASEFSFRPMLNAFNDFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH KDIQNIPRTARRIANVLDASPERIWERTKAGGIAVFRNAKNDAKRNPLKIVQSTVRQVIT HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH GIAIENVPIVRDAQVMSAYFGTGVDSRLVAAKDQLEKAVEAVKGQASKIRKIEVSVFGAD HHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHEEEEEEEEECCC RGCVLARAFVNDLATKYKRRDDQDLALNGISLEIKFVGLLDAVSSIMSEEAGEIIGILPF CCHHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEEHHHHHHHHHHHHHHHCCCEEHHHH LGTIKPNYKDRSLAVPASVQRCVHFAAAHEMRMYQRLDSLEKTRAEQRLYPGTSSDIAGG HHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC SLHGSLGFNAELMRIPLRDMLFEALKAGSALLDMETLAKRRPDVFSRFSIATPITYDGKQ CCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCCCCEECCCH YRIKALVDAYRKVVPDTQGVNFLPHAEVFLRWIAVRYQDPEFRHSVTDPATEWRKDVERA HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHC DYDRRDAKAKLDWAMMGRQRMDSPEIQKLKLAKQAADKRYNDLWKDVPPSNYTTVWQRLD CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KEAKEMTGKWEKMRPEYEAEQQRRFTQSFNNKPTYTPLFLAPAFARHVELNEDEVALVRA HHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH WEQGYAGKNPLPSEVMAMFDMLVHDTLLTSWQDHVLAPSLYFRTRDKDVFGKTDYAKEDK HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCHHHHH QRKSDDLTAERVDQASKQSQQWARGYQGTPPTH HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AGANDRNAIRLDPDDATPQSVRMAVDKMATANYPKGDCLPCGATIRIGVFFDAFGRSRD CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHCCCCC EDDPDSGLYSNISRLFDAHRTNLDVDRPVNQFWFRLYYSGLGTDLNADAKSNDWLNAGLA CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH AGKMVGKKVLAATKGVAESVARVNQPIKQLDVKGRVTTATKQSASEFSFRPMLNAFNDFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH KDIQNIPRTARRIANVLDASPERIWERTKAGGIAVFRNAKNDAKRNPLKIVQSTVRQVIT HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH GIAIENVPIVRDAQVMSAYFGTGVDSRLVAAKDQLEKAVEAVKGQASKIRKIEVSVFGAD HHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHEEEEEEEEECCC RGCVLARAFVNDLATKYKRRDDQDLALNGISLEIKFVGLLDAVSSIMSEEAGEIIGILPF CCHHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEEHHHHHHHHHHHHHHHCCCEEHHHH LGTIKPNYKDRSLAVPASVQRCVHFAAAHEMRMYQRLDSLEKTRAEQRLYPGTSSDIAGG HHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC SLHGSLGFNAELMRIPLRDMLFEALKAGSALLDMETLAKRRPDVFSRFSIATPITYDGKQ CCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCCCCEECCCH YRIKALVDAYRKVVPDTQGVNFLPHAEVFLRWIAVRYQDPEFRHSVTDPATEWRKDVERA HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHC DYDRRDAKAKLDWAMMGRQRMDSPEIQKLKLAKQAADKRYNDLWKDVPPSNYTTVWQRLD CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KEAKEMTGKWEKMRPEYEAEQQRRFTQSFNNKPTYTPLFLAPAFARHVELNEDEVALVRA HHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH WEQGYAGKNPLPSEVMAMFDMLVHDTLLTSWQDHVLAPSLYFRTRDKDVFGKTDYAKEDK HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCHHHHH QRKSDDLTAERVDQASKQSQQWARGYQGTPPTH HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA