| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116688501
Identifier: 116688501
GI number: 116688501
Start: 532330
End: 533166
Strand: Direct
Name: 116688501
Synonym: Bcen2424_0477
Alternate gene names: NA
Gene position: 532330-533166 (Clockwise)
Preceding gene: 116688500
Following gene: 116688502
Centisome position: 15.28
GC content: 59.38
Gene sequence:
>837_bases GTGACGTGGCGTAGGTCCGGGCTCGTGGTGGGGCTGCTCGCGGTGGCTTTGAGCTTGAGCGCGTGCGGCAAGTCGGAGCC GGTGTATAGCGGAATTTCCGTGATGGGCCGGAACTATCTGCCGTACAACATGAACGGCTTCACCATCGCCGATGCCAACG GCAACAAGGCAAACGGCGGTGGAGACGACCCGCCCGGCGCAGGAGGGGGCAGCGTCGCGTGCTGCTACACGCTCAAGGGC ACCGAATTTACGGTCAAATGGAAGTACTACGACGCAGATCGATGGACGATGGACGACTCGCACGCGCAACAAGTCGAGAC CAAGGTCGTGATGCCGCGGTCGGTCGTTCCCGGAAAAGTCGGCAGCCGTATTCTCGAAGTTCATTTCTATCCGGATCGTC ACGTCGAGTTTCAGTTTCCCGGCGAACTTCTGGATGAATCGCGCATTCCAGTTGCGGATGTTTCGCGATGGATGGCGACG CACTATCAGGAGCAACTGGACAAGAAATTCGGCGATACGGACGGGCAGTCGCATCGGCGCATCGCTCGTGTCGTCGCGTC GGCGTGGTTGAAATATCGTCTGACCGATCGCGATGATCTCGAGCAGTATGTGTATTACGCGTTGCTCGTGAACGGCCGGT TCGATGCACATTCTGAGGTTCAGCGCATCCTGCAAACGGCCGCTGGCAAGCCGGGAATGTTCGCGAAATCGATGCAATCG CTGCCGAAGCGTGTGTTGTCCTCGCTGTCGAACGATGCGTTCGAAGCAGCGACGGTGCCAGCGATATCCGATGGTTTGCT GCCACCGCCGCGTGTAGAGGAGGCGCTGCATGGGTGA
Upstream 100 bases:
>100_bases CGCGGAGAAACGAGCGTCGATGCGGCACTGGCCTCGATCGACGATGCGACGTGGGACGCGATTCGCGATGCGCACGAGCG GGGATTGCTGGAGGCGCGTA
Downstream 100 bases:
>100_bases TCGTATCGGGTACGTATTGGGTGCGATTTGCGATGCAGACGACCGGATCCTTCTGGAGGAACTCAGCGGTGCGGCGTCAG TCTGCGATCGCCGTTTGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MTWRRSGLVVGLLAVALSLSACGKSEPVYSGISVMGRNYLPYNMNGFTIADANGNKANGGGDDPPGAGGGSVACCYTLKG TEFTVKWKYYDADRWTMDDSHAQQVETKVVMPRSVVPGKVGSRILEVHFYPDRHVEFQFPGELLDESRIPVADVSRWMAT HYQEQLDKKFGDTDGQSHRRIARVVASAWLKYRLTDRDDLEQYVYYALLVNGRFDAHSEVQRILQTAAGKPGMFAKSMQS LPKRVLSSLSNDAFEAATVPAISDGLLPPPRVEEALHG
Sequences:
>Translated_278_residues MTWRRSGLVVGLLAVALSLSACGKSEPVYSGISVMGRNYLPYNMNGFTIADANGNKANGGGDDPPGAGGGSVACCYTLKG TEFTVKWKYYDADRWTMDDSHAQQVETKVVMPRSVVPGKVGSRILEVHFYPDRHVEFQFPGELLDESRIPVADVSRWMAT HYQEQLDKKFGDTDGQSHRRIARVVASAWLKYRLTDRDDLEQYVYYALLVNGRFDAHSEVQRILQTAAGKPGMFAKSMQS LPKRVLSSLSNDAFEAATVPAISDGLLPPPRVEEALHG >Mature_277_residues TWRRSGLVVGLLAVALSLSACGKSEPVYSGISVMGRNYLPYNMNGFTIADANGNKANGGGDDPPGAGGGSVACCYTLKGT EFTVKWKYYDADRWTMDDSHAQQVETKVVMPRSVVPGKVGSRILEVHFYPDRHVEFQFPGELLDESRIPVADVSRWMATH YQEQLDKKFGDTDGQSHRRIARVVASAWLKYRLTDRDDLEQYVYYALLVNGRFDAHSEVQRILQTAAGKPGMFAKSMQSL PKRVLSSLSNDAFEAATVPAISDGLLPPPRVEEALHG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30663; Mature: 30532
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWRRSGLVVGLLAVALSLSACGKSEPVYSGISVMGRNYLPYNMNGFTIADANGNKANGG CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCC GDDPPGAGGGSVACCYTLKGTEFTVKWKYYDADRWTMDDSHAQQVETKVVMPRSVVPGKV CCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCC GSRILEVHFYPDRHVEFQFPGELLDESRIPVADVSRWMATHYQEQLDKKFGDTDGQSHRR CCEEEEEEECCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH IARVVASAWLKYRLTDRDDLEQYVYYALLVNGRFDAHSEVQRILQTAAGKPGMFAKSMQS HHHHHHHHHHHEECCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHH LPKRVLSSLSNDAFEAATVPAISDGLLPPPRVEEALHG HHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHCC >Mature Secondary Structure TWRRSGLVVGLLAVALSLSACGKSEPVYSGISVMGRNYLPYNMNGFTIADANGNKANGG CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCC GDDPPGAGGGSVACCYTLKGTEFTVKWKYYDADRWTMDDSHAQQVETKVVMPRSVVPGKV CCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCC GSRILEVHFYPDRHVEFQFPGELLDESRIPVADVSRWMATHYQEQLDKKFGDTDGQSHRR CCEEEEEEECCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH IARVVASAWLKYRLTDRDDLEQYVYYALLVNGRFDAHSEVQRILQTAAGKPGMFAKSMQS HHHHHHHHHHHEECCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHH LPKRVLSSLSNDAFEAATVPAISDGLLPPPRVEEALHG HHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA