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The map label for this gene is rci [H]

Identifier: 116688470

GI number: 116688470

Start: 491220

End: 492263

Strand: Direct

Name: rci [H]

Synonym: Bcen2424_0446

Alternate gene names: 116688470

Gene position: 491220-492263 (Clockwise)

Preceding gene: 116688469

Following gene: 116688471

Centisome position: 14.1

GC content: 59.58

Gene sequence:

>1044_bases
ATGGCAACCATCGTCAAGACGCCTTCCGGTACGTGGAAGGCCGTCATCCGCAAGATCGGCTGGCCGACCTCGGCCAAGAC
ATTCCGCACCAAACGCGATGCCGAGGATTGGGCGCGTCGAACAGAAGATGAGATGGTTCGGGGCGTCTATCTGTCGCGTG
CTCCCTCCGAAAAACTCACGGTGTCAGCCGCGCTGAAGCGGTATATGGAAGAGGTGTCGGTTACCAAGAAGGCGACCACG
CAGCGCAGCGAGAGCTTTTCTGCGAAGCACCTGGAGGCGTTCTTCGGGAAGTATTCGATGGCGGCCGTTAGTGCCGAGCT
CGTTGCCAAGTATCGCGACGAACGCCTCGCGGCTGGCAAATCAAACAACACGGTTCGCCTCGAGCTTGCGATGCTCGGGC
ATCTCTTCCGGATGGCGATTCAGGAGTGGGGAATTGGCCTGACTTTCAATCCCGTCGCCAATGTTCGCAAGCCGAGTCCC
GGTGCCGGCCGGGACCGGCGATTGAGTCGTGATGAACACCAACGTCTCTTCGCGGCCGCCGACGCCCATAGCAACCCGAT
GCTCGGCTGGATCGTGCGACTTGCCGTCGAAACCGGCATGCGATCGTCCGAGATCACGGGCTTGTGTCGCTCGCAAGTAG
ATTTGGATCGGCGAGTCGTGACCCTCAGGGATACAAAAAACGGTTCCAGTCGTGTGGTGCCGCTGACGCGTGAGGCAGCC
GAAGTCCTCCGTGCAGCCCTGGACAATCCGATACGGCCTATTGACACCGATCTCGTGTTCTTCGGCGAGCCAGGGCGAGA
CGGAAAGCGTAAGCCGTATGTGTTCCAGAAGCTCTGGACCGGTATCGTGCGCGACCTCGGGATGGTCGATCTGCATTTCC
ACGATCTGCGACATGAGGCAGTCAGTCGGCTTGTTGAGGCGGGGTTGAGTGATCAGGAGGTGGCCTCGATCAGCGGCCAT
AAGTCGATGCAAATGCTCAAGCGTTACACGCACCTACGAGCTGAAGATCTGGTGCAGAAGCTCGACACTCTTCGACGCGC
CTGA

Upstream 100 bases:

>100_bases
CCAATAGAATCAAGGGGTTACGTGAAATTCACGTAACCCCTTGTGCTTTCTGGGCGTTGAAAAGTACATTTTCGGTACAG
TCAGCTCTCAGAACAGGTAC

Downstream 100 bases:

>100_bases
TTCAGCCGCCGGCATGGTTTGAACGGCCATCGCGCGGAGAGCCGCAATCGACGTTATCGAGAGCGTGTACACGCTCTCTT
TTTAAATGTCGATTATATGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MATIVKTPSGTWKAVIRKIGWPTSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAALKRYMEEVSVTKKATT
QRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSP
GAGRDRRLSRDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRVVPLTREAA
EVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMVDLHFHDLRHEAVSRLVEAGLSDQEVASISGH
KSMQMLKRYTHLRAEDLVQKLDTLRRA

Sequences:

>Translated_347_residues
MATIVKTPSGTWKAVIRKIGWPTSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAALKRYMEEVSVTKKATT
QRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSP
GAGRDRRLSRDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRVVPLTREAA
EVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMVDLHFHDLRHEAVSRLVEAGLSDQEVASISGH
KSMQMLKRYTHLRAEDLVQKLDTLRRA
>Mature_346_residues
ATIVKTPSGTWKAVIRKIGWPTSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAALKRYMEEVSVTKKATTQ
RSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPG
AGRDRRLSRDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRVVPLTREAAE
VLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMVDLHFHDLRHEAVSRLVEAGLSDQEVASISGHK
SMQMLKRYTHLRAEDLVQKLDTLRRA

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=228, Percent_Identity=29.8245614035088, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39114; Mature: 38983

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIVKTPSGTWKAVIRKIGWPTSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT
CCEEEECCCCHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHCHHHHHHHHHHCCCCCHHHH
VSAALKRYMEEVSVTKKATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SNNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLSRDEHQRLFAAA
CCCEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
DAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRVVPLTREAA
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECHHHHH
EVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMVDLHFHDLRHEA
HHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VSRLVEAGLSDQEVASISGHKSMQMLKRYTHLRAEDLVQKLDTLRRA
HHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATIVKTPSGTWKAVIRKIGWPTSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT
CEEEECCCCHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHCHHHHHHHHHHCCCCCHHHH
VSAALKRYMEEVSVTKKATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SNNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLSRDEHQRLFAAA
CCCEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
DAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRVVPLTREAA
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECHHHHH
EVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMVDLHFHDLRHEA
HHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VSRLVEAGLSDQEVASISGHKSMQMLKRYTHLRAEDLVQKLDTLRRA
HHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]