| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688471
Identifier: 116688471
GI number: 116688471
Start: 492888
End: 493622
Strand: Direct
Name: 116688471
Synonym: Bcen2424_0447
Alternate gene names: NA
Gene position: 492888-493622 (Clockwise)
Preceding gene: 116688470
Following gene: 116688472
Centisome position: 14.15
GC content: 57.55
Gene sequence:
>735_bases ATGCACGGGCGCGTTGATACTACCTTCATCACCGTTCAGCGAGAGTTATACACGTCAGGTCTCGCTCGGGAGCTTGGGTC GGATGCGATAAACGTGTGGCTCGCAATCAAATGGCATGCCGATTTCAATACCGGAGTGGGGTATCCGAGTATTCGTCGCC TTATGGATCTAACGAAGCTGGCATCTGCCACTGTTCAAAAAGCCTTGATGCGGCTCGAAGCGGCTCGTTTGCTGAAGAAA GTAGGAAAGAAGGGACGGGCGCAATGCTACCTAGCGCGTGAGCGCTTGGATGTAACGTCGGAACAGGGAAAGTGCTGTTC GATCGTCATCGACTACGTACCCAGGAGCCTGTCGAAATGGATCGCACGGATCAAGGCCGCATTGGAAACCGGCGAGCACG ATCCGGACGCATTCGCTCGTGTCGAAGTCGTTCCGGGCGCGGGACTTACTTGGGACTCGAAGACCGGAGAGTTACGTGCG GCCATCCCTGTTGCCGTTACTCCTCAGGCAGCCGGGCCACCATCTGACAAGCCGCTTTCGCCGCTAGCCGCACGCGTTGC GGAGATAGGAGCGAATGCAATGCGAGGCCCGGACAACGCAGCAAGCGGCCCGCCAAGGTGCACCAACACCAAGACGGGCC TGACCACAACCCACCTTCCACGAGGTGAATCATGGCTAGAACTGAGTGTACCTGCAACTCACAGCAACACGAAGCGGCTA ACGTCGCTCGTCTGA
Upstream 100 bases:
>100_bases ATAACGATGTGTCTCGCAAGTTGCTACCAGCACGGATCAAGATCGGTCGGCGTGTCTTGTTCAAAACGGCTGCAGTTGCG CACTTGTTCGCGGAATAAGT
Downstream 100 bases:
>100_bases GAGGCTTGCTGCACAACATCTCCAGAACACAGGAAGCATTCCAGCTTCTCATCAACTTGAGCAGTTTCGTTGATCCGAGC GATCAAGAGGCGTATTTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MHGRVDTTFITVQRELYTSGLARELGSDAINVWLAIKWHADFNTGVGYPSIRRLMDLTKLASATVQKALMRLEAARLLKK VGKKGRAQCYLARERLDVTSEQGKCCSIVIDYVPRSLSKWIARIKAALETGEHDPDAFARVEVVPGAGLTWDSKTGELRA AIPVAVTPQAAGPPSDKPLSPLAARVAEIGANAMRGPDNAASGPPRCTNTKTGLTTTHLPRGESWLELSVPATHSNTKRL TSLV
Sequences:
>Translated_244_residues MHGRVDTTFITVQRELYTSGLARELGSDAINVWLAIKWHADFNTGVGYPSIRRLMDLTKLASATVQKALMRLEAARLLKK VGKKGRAQCYLARERLDVTSEQGKCCSIVIDYVPRSLSKWIARIKAALETGEHDPDAFARVEVVPGAGLTWDSKTGELRA AIPVAVTPQAAGPPSDKPLSPLAARVAEIGANAMRGPDNAASGPPRCTNTKTGLTTTHLPRGESWLELSVPATHSNTKRL TSLV >Mature_244_residues MHGRVDTTFITVQRELYTSGLARELGSDAINVWLAIKWHADFNTGVGYPSIRRLMDLTKLASATVQKALMRLEAARLLKK VGKKGRAQCYLARERLDVTSEQGKCCSIVIDYVPRSLSKWIARIKAALETGEHDPDAFARVEVVPGAGLTWDSKTGELRA AIPVAVTPQAAGPPSDKPLSPLAARVAEIGANAMRGPDNAASGPPRCTNTKTGLTTTHLPRGESWLELSVPATHSNTKRL TSLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26348; Mature: 26348
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHGRVDTTFITVQRELYTSGLARELGSDAINVWLAIKWHADFNTGVGYPSIRRLMDLTKL CCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHH ASATVQKALMRLEAARLLKKVGKKGRAQCYLARERLDVTSEQGKCCSIVIDYVPRSLSKW HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCEEEHHHHHHHHHHHHH IARIKAALETGEHDPDAFARVEVVPGAGLTWDSKTGELRAAIPVAVTPQAAGPPSDKPLS HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECEEECCCCCCCCCCCCCH PLAARVAEIGANAMRGPDNAASGPPRCTNTKTGLTTTHLPRGESWLELSVPATHSNTKRL HHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCHHHH TSLV HHCC >Mature Secondary Structure MHGRVDTTFITVQRELYTSGLARELGSDAINVWLAIKWHADFNTGVGYPSIRRLMDLTKL CCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHH ASATVQKALMRLEAARLLKKVGKKGRAQCYLARERLDVTSEQGKCCSIVIDYVPRSLSKW HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCEEEHHHHHHHHHHHHH IARIKAALETGEHDPDAFARVEVVPGAGLTWDSKTGELRAAIPVAVTPQAAGPPSDKPLS HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECEEECCCCCCCCCCCCCH PLAARVAEIGANAMRGPDNAASGPPRCTNTKTGLTTTHLPRGESWLELSVPATHSNTKRL HHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCHHHH TSLV HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA