| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688336
Identifier: 116688336
GI number: 116688336
Start: 352944
End: 354185
Strand: Reverse
Name: 116688336
Synonym: Bcen2424_0312
Alternate gene names: NA
Gene position: 354185-352944 (Counterclockwise)
Preceding gene: 116688337
Following gene: 116688335
Centisome position: 10.17
GC content: 66.91
Gene sequence:
>1242_bases ATGAAGCGCAACCTCATTCTGGCGGCGGCCCTTGCCGCCCCCCTTCTTTCCGCTTGCGGCGGCGGCAGCGACAATCCGCC CCCGCTCGTCGAAGACCGGCTGTGCCCCGCCACGCTCGACTACAACACCGTGTTTACGGGCGGCGCGGGCAGCGGCGAAC TCGCGAAGGTCCAGCTCGACACGACCAAGATGACCTGGCAGGTGACCTATGTCGAATCGGCGGTGCCGCAAAAGACCGGC ACCGTCACGCCGACCCGCGCGGGCACCGTCGACAGCGGCACGCTCACGCAGGAAACGCTGCTGCCGACCAACAAGCTGAA CCAGTGCGCATTCCGCCTGAACGGCGCGAGCCTCGATGCGTCGCGCCCGGCGCGCATCTTCGTCGGCTTCGGCGTTGCCG GCGGCACGATTCCCGGCAAGGAGATCCAGTTCGACGGCGTGCTCGGCCAGGCCGCGGTGCCCGACACAAAATTCCCGTAC TACCCGTTCATCGGCTTCTCGTCGATCGAAACCGACATCACGAAGGTCGCGGGCACGTACAGCCACATCGGCTTCGGCGA AGTACCGTCGCAGAAATTCGGGCCGGCGTCGATCGACGCGAAGGTGACGATCAACGCGGACGGCACCTGGACCAAGTGCG ACACGACCGGCCAGTTCGCCGGCGGCGCGTGCGCGCAGCAGGGCACGAATTTCGTGCAGTCGGCCGACGGCAGCGGCGCG TTCCAGTCGAACAACTACGCGAGCCAGTTGAAGCCGACGCTGTCGGCCACGCCGCAGGGCAAGGGCTTCATGATCGTCGG CAAGCTGCGTAACCAGCTCGTGCCGATCCTCGTGCGCACGGGGGTCGCGAACCCGAACCCGACGCCGGACAGCAACGGCG TGCCGGGCCTGACCGCCGACGACGAATCGAGCATCTCGATCCTCGCGCCGCAGACGGCCGTCGCGGCCGGCTCGCAGAAC GGCGAGTACATCGGCGTCGACAGCCAGTTCGATTACCGGACCACCGCGCTGATCGACAAGCAGGCCACGCTGCTCGATCC GTTCCAGCCGTCGCAGGCGTCGCTCGCGACCGCGCTCGACCTCGACTACACGCAGAAGGTGCCGGGCACGGTCACGACGA TCCACACGGGTTCGGGCAGCACGTCGCCGACCGGCAAGTTCATCTTCTCGGGTGGCGTGTTCGGTTTCCTCGACAACGCC GGATCGACGCCGTATTTCACGATCGGCGCATTCGTCCAGTAA
Upstream 100 bases:
>100_bases CACGAAGGCGCTCGGCACGGCGCAGGCAGGACGAGTACGACCAACAGAAGCGGCCGACAGGGAGCTGGCCGCCGCACAAA GACAAATCTGGAGGAGCAAC
Downstream 100 bases:
>100_bases GCGGAGGGGAAAGCCGTGATGAAGAAAACCCTTCTCTGCGCGGCGGCCGGCGCCGCCGCCGTGGCGCCGCTCGCGGCGCA CGCGCAGAGCGCCGGCAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: Large Exoprotein Involved In Heme Utilization Or Adhesion
Number of amino acids: Translated: 413; Mature: 413
Protein sequence:
>413_residues MKRNLILAAALAAPLLSACGGGSDNPPPLVEDRLCPATLDYNTVFTGGAGSGELAKVQLDTTKMTWQVTYVESAVPQKTG TVTPTRAGTVDSGTLTQETLLPTNKLNQCAFRLNGASLDASRPARIFVGFGVAGGTIPGKEIQFDGVLGQAAVPDTKFPY YPFIGFSSIETDITKVAGTYSHIGFGEVPSQKFGPASIDAKVTINADGTWTKCDTTGQFAGGACAQQGTNFVQSADGSGA FQSNNYASQLKPTLSATPQGKGFMIVGKLRNQLVPILVRTGVANPNPTPDSNGVPGLTADDESSISILAPQTAVAAGSQN GEYIGVDSQFDYRTTALIDKQATLLDPFQPSQASLATALDLDYTQKVPGTVTTIHTGSGSTSPTGKFIFSGGVFGFLDNA GSTPYFTIGAFVQ
Sequences:
>Translated_413_residues MKRNLILAAALAAPLLSACGGGSDNPPPLVEDRLCPATLDYNTVFTGGAGSGELAKVQLDTTKMTWQVTYVESAVPQKTG TVTPTRAGTVDSGTLTQETLLPTNKLNQCAFRLNGASLDASRPARIFVGFGVAGGTIPGKEIQFDGVLGQAAVPDTKFPY YPFIGFSSIETDITKVAGTYSHIGFGEVPSQKFGPASIDAKVTINADGTWTKCDTTGQFAGGACAQQGTNFVQSADGSGA FQSNNYASQLKPTLSATPQGKGFMIVGKLRNQLVPILVRTGVANPNPTPDSNGVPGLTADDESSISILAPQTAVAAGSQN GEYIGVDSQFDYRTTALIDKQATLLDPFQPSQASLATALDLDYTQKVPGTVTTIHTGSGSTSPTGKFIFSGGVFGFLDNA GSTPYFTIGAFVQ >Mature_413_residues MKRNLILAAALAAPLLSACGGGSDNPPPLVEDRLCPATLDYNTVFTGGAGSGELAKVQLDTTKMTWQVTYVESAVPQKTG TVTPTRAGTVDSGTLTQETLLPTNKLNQCAFRLNGASLDASRPARIFVGFGVAGGTIPGKEIQFDGVLGQAAVPDTKFPY YPFIGFSSIETDITKVAGTYSHIGFGEVPSQKFGPASIDAKVTINADGTWTKCDTTGQFAGGACAQQGTNFVQSADGSGA FQSNNYASQLKPTLSATPQGKGFMIVGKLRNQLVPILVRTGVANPNPTPDSNGVPGLTADDESSISILAPQTAVAAGSQN GEYIGVDSQFDYRTTALIDKQATLLDPFQPSQASLATALDLDYTQKVPGTVTTIHTGSGSTSPTGKFIFSGGVFGFLDNA GSTPYFTIGAFVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42779; Mature: 42779
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRNLILAAALAAPLLSACGGGSDNPPPLVEDRLCPATLDYNTVFTGGAGSGELAKVQLD CCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCEEEEEEE TTKMTWQVTYVESAVPQKTGTVTPTRAGTVDSGTLTQETLLPTNKLNQCAFRLNGASLDA CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCC SRPARIFVGFGVAGGTIPGKEIQFDGVLGQAAVPDTKFPYYPFIGFSSIETDITKVAGTY CCCEEEEEEECCCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCH SHIGFGEVPSQKFGPASIDAKVTINADGTWTKCDTTGQFAGGACAQQGTNFVQSADGSGA HCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCHHHHHCCHHHHCCCCCCC FQSNNYASQLKPTLSATPQGKGFMIVGKLRNQLVPILVRTGVANPNPTPDSNGVPGLTAD CCCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC DESSISILAPQTAVAAGSQNGEYIGVDSQFDYRTTALIDKQATLLDPFQPSQASLATALD CCCCEEEECCCHHEECCCCCCCEEEECCCCCCEEEEEECCCHHCCCCCCCCHHHEEEEEC LDYTQKVPGTVTTIHTGSGSTSPTGKFIFSGGVFGFLDNAGSTPYFTIGAFVQ CCCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEECC >Mature Secondary Structure MKRNLILAAALAAPLLSACGGGSDNPPPLVEDRLCPATLDYNTVFTGGAGSGELAKVQLD CCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCEEEEEEE TTKMTWQVTYVESAVPQKTGTVTPTRAGTVDSGTLTQETLLPTNKLNQCAFRLNGASLDA CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCC SRPARIFVGFGVAGGTIPGKEIQFDGVLGQAAVPDTKFPYYPFIGFSSIETDITKVAGTY CCCEEEEEEECCCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCH SHIGFGEVPSQKFGPASIDAKVTINADGTWTKCDTTGQFAGGACAQQGTNFVQSADGSGA HCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCHHHHHCCHHHHCCCCCCC FQSNNYASQLKPTLSATPQGKGFMIVGKLRNQLVPILVRTGVANPNPTPDSNGVPGLTAD CCCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC DESSISILAPQTAVAAGSQNGEYIGVDSQFDYRTTALIDKQATLLDPFQPSQASLATALD CCCCEEEECCCHHEECCCCCCCEEEECCCCCCEEEEEECCCHHCCCCCCCCHHHEEEEEC LDYTQKVPGTVTTIHTGSGSTSPTGKFIFSGGVFGFLDNAGSTPYFTIGAFVQ CCCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA