Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is 116688337

Identifier: 116688337

GI number: 116688337

Start: 354334

End: 355755

Strand: Reverse

Name: 116688337

Synonym: Bcen2424_0313

Alternate gene names: NA

Gene position: 355755-354334 (Counterclockwise)

Preceding gene: 116688338

Following gene: 116688336

Centisome position: 10.21

GC content: 68.78

Gene sequence:

>1422_bases
ATGTCGCACGCCTTATCGAAGGGGGTGGCAACGGCCTTTGCCATTGCCCCTTTCCTGGTTGCATGTGGTGGGGGGGACTC
CGGCGGCGCGCTCGCGCCGATCAATGCGCCCCAATGTTCCGGCTCGAGTTGCGGCACGCAAGGGCAGCCGCCTTCGCAGC
CCATCAGCGGCGCACTGTGCCCGGCCAACGCGGATATCGTGAAGAGCACGTATCTCGGCGGTGCGGGGAGCGGCGAGATC
GTCAGCGTCAACATCGACGCGGTCGCGATGACGTACACGCTCAAGTGGCTTGAATCGCCGATTCCGCTGAAGACCGGCAC
CGTCACGCCGAGCCGCGTCGGCACGACCATCACCGGCAAGGTCATCCACCCGCCAACCGGCACGCTGCCGACCGCCGAGC
AGACGCGCTGCGCGTTCGTCCTCACGCCGGGCACCGGCCCCGCGCCGGACGGCTCGACCTATTCGACGGCCGCCGACTTC
AACCAGGCGAACCCGCCGATGCTGCTGGTCGGCATGGGCGTGGCGGGCGGCGGCATTCCCGGCGCGACGATCCAGTACGA
CGGGCTGACGATCATCCCGGGCGTCGTGCAGAACGTCGGCCAGGTGCCGAACCGTCACTTCGACTTCTATCCGTTCCTCG
GCTTCGCGAACACGACGACCGACCTCTCGAAGCTGCCGGGCACGTACAACGCGCTGCTCTATCACCTCGTGCCGTCGGGC
AACTACGCGACGAAAGGCTCGAACTCGAGCGAGACGTTCGACGCGAACGGCGCGTGCACGTCGAGCGGGTCGGGCGGCTG
CCAGACCACCGGCGATCCGTGGAAGACGAGCGCGAACGGCGGCTACTTCGACAGCACCAAGGCGCCGCAGACGCTGCCGC
AGACGCAACTGCCGATCGTCGGCGCGACCGGCAAGTCGGCGACCGCGCACATGGTGATCGGCCAGCTCAACGGCGCGACG
GTGCCGGTGATCGTGCGCACGGGCAACGTGAACCTCGGCACGCCGCCGCTGCACCTCGACGCGCAGGTCGACGACGAATC
GGGCATCGCGGTGCTCGGCGCGGCGACGGCCGTCACGTCGGGCACGATCGATGGCGGCTACGCGGGCGCGGACTCGAACT
TCAAGTACACGGCCGCGCTGATCCGCGGCAGCAACGCGTCGTTCATCAACCCGTCCACGCAGGCCGAGGAAGACGGCTTC
ACGCTCGACTACGGCCAGACGACGCCGGGCCTGCTGAACGCGAAGACCACCCCGCCGAGCGGCGCGAGCTACCCGTCCGC
GTCGGGCGTGGTGATCGCGACGGGCGGCCTGTATGCGGCGCTGATCCAGGGCACGGTGAACGGCGGCGTCACGTCGACGT
CGGCGAATTCGACGACGTCGTCGACCCCGTACTTCGGCGTGGGTGCGCAGATCAGCAAGTAG

Upstream 100 bases:

>100_bases
CTCCCGTTTCAATCGCCTTTTTTAGACGGGTTCATCAATTGACAGCAAAAACCCAGGCAGCGACATTAGCTCGCACAATT
AAACGATTGGAGACAGCGGC

Downstream 100 bases:

>100_bases
CGATCGAGGACGCGGCGGCCGGCCTGCCGCCGCGGATGGCAGGGAAGGCACGAAGGCGCTCGGCACGGCGCAGGCAGGAC
GAGTACGACCAACAGAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Large Exoprotein Involved In Heme Utilization Or Adhesion

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MSHALSKGVATAFAIAPFLVACGGGDSGGALAPINAPQCSGSSCGTQGQPPSQPISGALCPANADIVKSTYLGGAGSGEI
VSVNIDAVAMTYTLKWLESPIPLKTGTVTPSRVGTTITGKVIHPPTGTLPTAEQTRCAFVLTPGTGPAPDGSTYSTAADF
NQANPPMLLVGMGVAGGGIPGATIQYDGLTIIPGVVQNVGQVPNRHFDFYPFLGFANTTTDLSKLPGTYNALLYHLVPSG
NYATKGSNSSETFDANGACTSSGSGGCQTTGDPWKTSANGGYFDSTKAPQTLPQTQLPIVGATGKSATAHMVIGQLNGAT
VPVIVRTGNVNLGTPPLHLDAQVDDESGIAVLGAATAVTSGTIDGGYAGADSNFKYTAALIRGSNASFINPSTQAEEDGF
TLDYGQTTPGLLNAKTTPPSGASYPSASGVVIATGGLYAALIQGTVNGGVTSTSANSTTSSTPYFGVGAQISK

Sequences:

>Translated_473_residues
MSHALSKGVATAFAIAPFLVACGGGDSGGALAPINAPQCSGSSCGTQGQPPSQPISGALCPANADIVKSTYLGGAGSGEI
VSVNIDAVAMTYTLKWLESPIPLKTGTVTPSRVGTTITGKVIHPPTGTLPTAEQTRCAFVLTPGTGPAPDGSTYSTAADF
NQANPPMLLVGMGVAGGGIPGATIQYDGLTIIPGVVQNVGQVPNRHFDFYPFLGFANTTTDLSKLPGTYNALLYHLVPSG
NYATKGSNSSETFDANGACTSSGSGGCQTTGDPWKTSANGGYFDSTKAPQTLPQTQLPIVGATGKSATAHMVIGQLNGAT
VPVIVRTGNVNLGTPPLHLDAQVDDESGIAVLGAATAVTSGTIDGGYAGADSNFKYTAALIRGSNASFINPSTQAEEDGF
TLDYGQTTPGLLNAKTTPPSGASYPSASGVVIATGGLYAALIQGTVNGGVTSTSANSTTSSTPYFGVGAQISK
>Mature_472_residues
SHALSKGVATAFAIAPFLVACGGGDSGGALAPINAPQCSGSSCGTQGQPPSQPISGALCPANADIVKSTYLGGAGSGEIV
SVNIDAVAMTYTLKWLESPIPLKTGTVTPSRVGTTITGKVIHPPTGTLPTAEQTRCAFVLTPGTGPAPDGSTYSTAADFN
QANPPMLLVGMGVAGGGIPGATIQYDGLTIIPGVVQNVGQVPNRHFDFYPFLGFANTTTDLSKLPGTYNALLYHLVPSGN
YATKGSNSSETFDANGACTSSGSGGCQTTGDPWKTSANGGYFDSTKAPQTLPQTQLPIVGATGKSATAHMVIGQLNGATV
PVIVRTGNVNLGTPPLHLDAQVDDESGIAVLGAATAVTSGTIDGGYAGADSNFKYTAALIRGSNASFINPSTQAEEDGFT
LDYGQTTPGLLNAKTTPPSGASYPSASGVVIATGGLYAALIQGTVNGGVTSTSANSTTSSTPYFGVGAQISK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47209; Mature: 47078

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHALSKGVATAFAIAPFLVACGGGDSGGALAPINAPQCSGSSCGTQGQPPSQPISGALC
CCCHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEC
PANADIVKSTYLGGAGSGEIVSVNIDAVAMTYTLKWLESPIPLKTGTVTPSRVGTTITGK
CCCCCHHHHEECCCCCCCCEEEEEECEEEEEEEEEHHCCCCCCCCCCCCHHHCCCEEEEE
VIHPPTGTLPTAEQTRCAFVLTPGTGPAPDGSTYSTAADFNQANPPMLLVGMGVAGGGIP
EECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
GATIQYDGLTIIPGVVQNVGQVPNRHFDFYPFLGFANTTTDLSKLPGTYNALLYHLVPSG
CCEEEECCEEECCHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHCCCCCEEEEEEEECCC
NYATKGSNSSETFDANGACTSSGSGGCQTTGDPWKTSANGGYFDSTKAPQTLPQTQLPIV
CEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEE
GATGKSATAHMVIGQLNGATVPVIVRTGNVNLGTPPLHLDAQVDDESGIAVLGAATAVTS
ECCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEHHHEEC
GTIDGGYAGADSNFKYTAALIRGSNASFINPSTQAEEDGFTLDYGQTTPGLLNAKTTPPS
CCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCEEEECCCCCCCEEECCCCCCC
GASYPSASGVVIATGGLYAALIQGTVNGGVTSTSANSTTSSTPYFGVGAQISK
CCCCCCCCCEEEEECCCEEEEEHHCCCCCEEECCCCCCCCCCCEEECCCEECC
>Mature Secondary Structure 
SHALSKGVATAFAIAPFLVACGGGDSGGALAPINAPQCSGSSCGTQGQPPSQPISGALC
CCHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEC
PANADIVKSTYLGGAGSGEIVSVNIDAVAMTYTLKWLESPIPLKTGTVTPSRVGTTITGK
CCCCCHHHHEECCCCCCCCEEEEEECEEEEEEEEEHHCCCCCCCCCCCCHHHCCCEEEEE
VIHPPTGTLPTAEQTRCAFVLTPGTGPAPDGSTYSTAADFNQANPPMLLVGMGVAGGGIP
EECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
GATIQYDGLTIIPGVVQNVGQVPNRHFDFYPFLGFANTTTDLSKLPGTYNALLYHLVPSG
CCEEEECCEEECCHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHCCCCCEEEEEEEECCC
NYATKGSNSSETFDANGACTSSGSGGCQTTGDPWKTSANGGYFDSTKAPQTLPQTQLPIV
CEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEE
GATGKSATAHMVIGQLNGATVPVIVRTGNVNLGTPPLHLDAQVDDESGIAVLGAATAVTS
ECCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEHHHEEC
GTIDGGYAGADSNFKYTAALIRGSNASFINPSTQAEEDGFTLDYGQTTPGLLNAKTTPPS
CCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCEEEECCCCCCCEEECCCCCCC
GASYPSASGVVIATGGLYAALIQGTVNGGVTSTSANSTTSSTPYFGVGAQISK
CCCCCCCCCEEEEECCCEEEEEHHCCCCCEEECCCCCCCCCCCEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA