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The map label for this gene is ybeY [C]

Identifier: 116626740

GI number: 116626740

Start: 9687313

End: 9687756

Strand: Direct

Name: ybeY [C]

Synonym: Acid_7712

Alternate gene names: 116626740

Gene position: 9687313-9687756 (Clockwise)

Preceding gene: 116626739

Following gene: 116626741

Centisome position: 97.21

GC content: 64.19

Gene sequence:

>444_bases
ATGTCCTCCCCCGAAGGCAGTAGCGTCACGTTCCGTCGCGCTCCCGCCACTCTACGCCGCCCCGCGATCGAACGCTTCGC
CCGCCGCCTTCAGAAGGAAGTCGCTGACGGCGCTCCCTTTGACACCTTGATCACCGGCGACGCCGAGCTTCGCCGGCTCA
ATCGCGACTTCCGCAAGAAAGACTACGCCACCGATGTCCTCTCCTTCCCTTCGGGCGGACCTGGTCTCGGCGACCTCGCC
ATCTCGCTCGGCCGCGCCCGTGCCCAAGCTCGCGAATTCGGACACACCATCGAACAGGAAATCTCCATCCTCATGCTCCA
TGGCGTGCTGCACCTTCTGGGGCACGATCATGAAGTCGATCGCGGCCGCATGGCCAGCCTCGAAAAACGCTGGCGCGCCA
AACTCGGTCTTCCCACTGGCCTCATCGAGCGGGTGCAGTCATGA

Upstream 100 bases:

>100_bases
AGAGCGTGAGTGCGAACACGAACGTGAGCACGAACGGTAACGGCGAGGTCCAGGTGGAGACCCCTGCGGCCGATTCCGCC
TCGCAGGCCTGAGCTCCGCC

Downstream 100 bases:

>100_bases
TTCTCGGCATCCTCCTGGGTATCCTGATCACCATTCCGCTGCTCGCCCTCACCACCTTCGTCCAGGTGCTCTACCTGGAG
AGTCTGCGCTTGCGCACGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MSSPEGSSVTFRRAPATLRRPAIERFARRLQKEVADGAPFDTLITGDAELRRLNRDFRKKDYATDVLSFPSGGPGLGDLA
ISLGRARAQAREFGHTIEQEISILMLHGVLHLLGHDHEVDRGRMASLEKRWRAKLGLPTGLIERVQS

Sequences:

>Translated_147_residues
MSSPEGSSVTFRRAPATLRRPAIERFARRLQKEVADGAPFDTLITGDAELRRLNRDFRKKDYATDVLSFPSGGPGLGDLA
ISLGRARAQAREFGHTIEQEISILMLHGVLHLLGHDHEVDRGRMASLEKRWRAKLGLPTGLIERVQS
>Mature_146_residues
SSPEGSSVTFRRAPATLRRPAIERFARRLQKEVADGAPFDTLITGDAELRRLNRDFRKKDYATDVLSFPSGGPGLGDLAI
SLGRARAQAREFGHTIEQEISILMLHGVLHLLGHDHEVDRGRMASLEKRWRAKLGLPTGLIERVQS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_SOLUE (Q01P09)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_828896.1
- ProteinModelPortal:   Q01P09
- SMR:   Q01P09
- STRING:   Q01P09
- GeneID:   4429377
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_7712
- NMPDR:   fig|234267.9.peg.7314
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   GQMREKE
- PhylomeDB:   Q01P09
- ProtClustDB:   CLSK774990
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16368; Mature: 16237

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPEGSSVTFRRAPATLRRPAIERFARRLQKEVADGAPFDTLITGDAELRRLNRDFRKK
CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHH
DYATDVLSFPSGGPGLGDLAISLGRARAQAREFGHTIEQEISILMLHGVLHLLGHDHEVD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RGRMASLEKRWRAKLGLPTGLIERVQS
CHHHHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure 
SSPEGSSVTFRRAPATLRRPAIERFARRLQKEVADGAPFDTLITGDAELRRLNRDFRKK
CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHH
DYATDVLSFPSGGPGLGDLAISLGRARAQAREFGHTIEQEISILMLHGVLHLLGHDHEVD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RGRMASLEKRWRAKLGLPTGLIERVQS
CHHHHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA