Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 116626567

GI number: 116626567

Start: 9438103

End: 9438699

Strand: Direct

Name: ydcN [C]

Synonym: Acid_7530

Alternate gene names: 116626567

Gene position: 9438103-9438699 (Clockwise)

Preceding gene: 116626564

Following gene: 116626572

Centisome position: 94.71

GC content: 62.31

Gene sequence:

>597_bases
ATGCCATCCGACACCATTACTGCCGGCCTCAACAAATACGGCATTGGGGCCAAGCTGAGGCGGCTCCGCCTGCGCAAGAG
CATGGGTTTGCTGGAGTTGAGCAAACACACCCGGCTATCCCCGGCACTGCTATCTAAGTTAGAGCGCGACGTGATGCATC
CCACCCTGCCGACACTGTTTCGCATCTCGATGGTCTTCAGCGTCGGGCTGGAGTACTTCTTCAACCCCGAGCCACGCCCG
GTGCTGGAGATCGTTCGCAGGAAGGACCGCCTGCGCTTTCCGGATTCGCCGGATGCCAGACCGGTGTCATACCACTTCGA
GAGCCTGGATTTCCCCGTCGCCGACCGCAAGCTGAATTCGTATCTCGCCGAGTTCGAGGCGGTGGAGGAGACCAGGGTCC
ACGAACATCCCGGCATCGAATTCTTGTACCTGCTCTCGGGAAAACTGGAGATCCGCGCGGGCGAAGACACTCACGAGTTG
GCGGAGGGTGATGCGATCTACTTCGACTGCACGGTGCCGCACGGCTACCGCCGCCTCGGCTCCAGGCGCACCACGGCGTT
GGTCGTGACGCTGGCGCCGCTCGGAGGCGCCGCCTAA

Upstream 100 bases:

>100_bases
GAGAAAAACTGTTTTATTGTGAAGAACAGAGATCAGTTGCCTTTCCTCTGCCGAAAAAAGGCGGTCCGAACAGGCAGTGA
GAGGAAAACGATCTTTCGCG

Downstream 100 bases:

>100_bases
TCGAGCAAACCCCGGCGCCGGGCCGGCTTCGACGTACGTTTTGCCGCGGGATCCAGCACTCTTCCAGAGGAGTCCAAGTG
ATGTACTTCGGCGTGCTCCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cro/CI Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator-Like Protein; Transcriptional Regulatory Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator Protein; Transcriptional Regulator Xre Family; Transcription Regulator; XRE Family-Like Protein; Cupin/Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MPSDTITAGLNKYGIGAKLRRLRLRKSMGLLELSKHTRLSPALLSKLERDVMHPTLPTLFRISMVFSVGLEYFFNPEPRP
VLEIVRRKDRLRFPDSPDARPVSYHFESLDFPVADRKLNSYLAEFEAVEETRVHEHPGIEFLYLLSGKLEIRAGEDTHEL
AEGDAIYFDCTVPHGYRRLGSRRTTALVVTLAPLGGAA

Sequences:

>Translated_198_residues
MPSDTITAGLNKYGIGAKLRRLRLRKSMGLLELSKHTRLSPALLSKLERDVMHPTLPTLFRISMVFSVGLEYFFNPEPRP
VLEIVRRKDRLRFPDSPDARPVSYHFESLDFPVADRKLNSYLAEFEAVEETRVHEHPGIEFLYLLSGKLEIRAGEDTHEL
AEGDAIYFDCTVPHGYRRLGSRRTTALVVTLAPLGGAA
>Mature_197_residues
PSDTITAGLNKYGIGAKLRRLRLRKSMGLLELSKHTRLSPALLSKLERDVMHPTLPTLFRISMVFSVGLEYFFNPEPRPV
LEIVRRKDRLRFPDSPDARPVSYHFESLDFPVADRKLNSYLAEFEAVEETRVHEHPGIEFLYLLSGKLEIRAGEDTHELA
EGDAIYFDCTVPHGYRRLGSRRTTALVVTLAPLGGAA

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22419; Mature: 22288

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50943 HTH_CROC1 ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSDTITAGLNKYGIGAKLRRLRLRKSMGLLELSKHTRLSPALLSKLERDVMHPTLPTLF
CCCCHHCCCCHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH
RISMVFSVGLEYFFNPEPRPVLEIVRRKDRLRFPDSPDARPVSYHFESLDFPVADRKLNS
HHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEHHCCCCCHHHHHHHH
YLAEFEAVEETRVHEHPGIEFLYLLSGKLEIRAGEDTHELAEGDAIYFDCTVPHGYRRLG
HHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCHHHHHCCCEEEEEECCCHHHHHHC
SRRTTALVVTLAPLGGAA
CCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
PSDTITAGLNKYGIGAKLRRLRLRKSMGLLELSKHTRLSPALLSKLERDVMHPTLPTLF
CCCHHCCCCHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH
RISMVFSVGLEYFFNPEPRPVLEIVRRKDRLRFPDSPDARPVSYHFESLDFPVADRKLNS
HHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEHHCCCCCHHHHHHHH
YLAEFEAVEETRVHEHPGIEFLYLLSGKLEIRAGEDTHELAEGDAIYFDCTVPHGYRRLG
HHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCHHHHHCCCEEEEEECCCHHHHHHC
SRRTTALVVTLAPLGGAA
CCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA