Definition Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession NC_008536
Length 9,965,640

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The map label for this gene is yahD [C]

Identifier: 116626383

GI number: 116626383

Start: 9222470

End: 9223132

Strand: Direct

Name: yahD [C]

Synonym: Acid_7343

Alternate gene names: 116626383

Gene position: 9222470-9223132 (Clockwise)

Preceding gene: 116626382

Following gene: 116626384

Centisome position: 92.54

GC content: 69.68

Gene sequence:

>663_bases
ATGCTCTTCGATGCCATTCGACAGGGCGATGCCGACCAGGTCCGCGCACTGCTTGCCGCCGACCCGGCGCTCGCCGATTC
CCGGACTCCGGAAGGCGCCACGCCTCTCTTGTGGGCCGTCTACACGCGCCACTCCGAACTCGCCCCGCTCCTGCTCGCCA
CGCGCCCGGCGGATTTCTTCGAAGCCTGCGCGCTCGGCGACACCGCGCGCGCCGCCGAACTCATCGCGCTTGACCCGGCT
CTTCCCAACCGCCATTCCGGCGACGGCTTCACCGGCCTCGGCTTCGCCTGCTTCTTCGCCCACGCCGACCTGGCCCGCCT
GCTGCTGGACGCCGGCGCCGACCCCAACCTGGCGGCGCGCAATGCCCTGGCGGTAGCTCCGCTCCACTCCGCCGTCGCCA
CCGACCTGGTCCCGCTGGTCGAACTCCTGTTAGCGCGCGGCGCCAGGCCGGATCCCGAGGAAGGCAGCGGAATGATGCCG
TTGCACACCGCCGCCGGCCATGGCAATCGTCAGATAATCTCTCTCCTGCTGGCCGCAGGCGCCGACCGCGGTCACAAAGC
GCGGGACGGACGCACGCCCGCCGATATCGCGCGCCACTATGGCCACGCCGAAGTCGCCGCCGAACTCGATGGTGACCGAA
CTTCGGTCACCGGAAAAATGTAA

Upstream 100 bases:

>100_bases
CCTGTCCAGCCGAGCTTGCTCGGCCGCGCGCCTGGCGCAGAACGAGCGAATTTCGCAAGATCCGATAAGACGCAAGCCGC
ATTTCGACCGATACTGAAGC

Downstream 100 bases:

>100_bases
GTCGCTGAGATGATTGTGTTCTAAAAAGCACGGTGACCTAACTTAGGTCACCATCCCGCTCCGTGGTACAAAAAGTTCAT
GCCCTCTTATCTGGTCGAAA

Product: ankyrin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLFDAIRQGDADQVRALLAADPALADSRTPEGATPLLWAVYTRHSELAPLLLATRPADFFEACALGDTARAAELIALDPA
LPNRHSGDGFTGLGFACFFAHADLARLLLDAGADPNLAARNALAVAPLHSAVATDLVPLVELLLARGARPDPEEGSGMMP
LHTAAGHGNRQIISLLLAAGADRGHKARDGRTPADIARHYGHAEVAAELDGDRTSVTGKM

Sequences:

>Translated_220_residues
MLFDAIRQGDADQVRALLAADPALADSRTPEGATPLLWAVYTRHSELAPLLLATRPADFFEACALGDTARAAELIALDPA
LPNRHSGDGFTGLGFACFFAHADLARLLLDAGADPNLAARNALAVAPLHSAVATDLVPLVELLLARGARPDPEEGSGMMP
LHTAAGHGNRQIISLLLAAGADRGHKARDGRTPADIARHYGHAEVAAELDGDRTSVTGKM
>Mature_220_residues
MLFDAIRQGDADQVRALLAADPALADSRTPEGATPLLWAVYTRHSELAPLLLATRPADFFEACALGDTARAAELIALDPA
LPNRHSGDGFTGLGFACFFAHADLARLLLDAGADPNLAARNALAVAPLHSAVATDLVPLVELLLARGARPDPEEGSGMMP
LHTAAGHGNRQIISLLLAAGADRGHKARDGRTPADIARHYGHAEVAAELDGDRTSVTGKM

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 8 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI52426735, Length=221, Percent_Identity=31.6742081447964, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI30425444, Length=242, Percent_Identity=32.2314049586777, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI52426737, Length=221, Percent_Identity=31.6742081447964, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI188595682, Length=221, Percent_Identity=31.6742081447964, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI32967601, Length=224, Percent_Identity=30.3571428571429, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI16975496, Length=191, Percent_Identity=32.9842931937173, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI70780355, Length=227, Percent_Identity=31.7180616740088, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI70780359, Length=227, Percent_Identity=31.7180616740088, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI215598574, Length=227, Percent_Identity=31.7180616740088, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI70780353, Length=227, Percent_Identity=31.7180616740088, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI70780357, Length=227, Percent_Identity=31.7180616740088, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI268607595, Length=221, Percent_Identity=33.9366515837104, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI62988328, Length=221, Percent_Identity=33.9366515837104, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI13376842, Length=155, Percent_Identity=33.5483870967742, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI46519151, Length=213, Percent_Identity=32.8638497652582, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI46519154, Length=213, Percent_Identity=32.8638497652582, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI87239981, Length=156, Percent_Identity=31.4102564102564, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI267844887, Length=177, Percent_Identity=31.638418079096, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI157743284, Length=215, Percent_Identity=30.6976744186047, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71981411, Length=222, Percent_Identity=31.5315315315315, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71981414, Length=215, Percent_Identity=31.6279069767442, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25145251, Length=215, Percent_Identity=31.6279069767442, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71981389, Length=215, Percent_Identity=31.6279069767442, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17542700, Length=215, Percent_Identity=31.6279069767442, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161082096, Length=206, Percent_Identity=31.0679611650485, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI161082085, Length=206, Percent_Identity=31.0679611650485, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI161082081, Length=206, Percent_Identity=31.0679611650485, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI161082106, Length=206, Percent_Identity=31.0679611650485, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI161082099, Length=206, Percent_Identity=31.0679611650485, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI161082110, Length=206, Percent_Identity=31.0679611650485, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI161082089, Length=206, Percent_Identity=32.0388349514563, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI161082092, Length=206, Percent_Identity=32.0388349514563, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281359521, Length=223, Percent_Identity=31.390134529148, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281359519, Length=223, Percent_Identity=31.390134529148, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28558752, Length=223, Percent_Identity=31.390134529148, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28558750, Length=223, Percent_Identity=31.390134529148, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28558756, Length=223, Percent_Identity=31.390134529148, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28558754, Length=223, Percent_Identity=31.390134529148, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21356741, Length=198, Percent_Identity=31.3131313131313, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45552223, Length=212, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17998549, Length=212, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221472807, Length=212, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281362364, Length=130, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650843, Length=192, Percent_Identity=34.375, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 22971; Mature: 22971

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MLFDAIRQGDADQVRALLAADPALADSRTPEGATPLLWAVYTRHSELAPLLLATRPADFF
CCCHHHHCCCHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHCCCCHHHH
EACALGDTARAAELIALDPALPNRHSGDGFTGLGFACFFAHADLARLLLDAGADPNLAAR
HHHHCCCHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
NALAVAPLHSAVATDLVPLVELLLARGARPDPEEGSGMMPLHTAAGHGNRQIISLLLAAG
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHC
ADRGHKARDGRTPADIARHYGHAEVAAELDGDRTSVTGKM
CCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLFDAIRQGDADQVRALLAADPALADSRTPEGATPLLWAVYTRHSELAPLLLATRPADFF
CCCHHHHCCCHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHCCCCHHHH
EACALGDTARAAELIALDPALPNRHSGDGFTGLGFACFFAHADLARLLLDAGADPNLAAR
HHHHCCCHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
NALAVAPLHSAVATDLVPLVELLLARGARPDPEEGSGMMPLHTAAGHGNRQIISLLLAAG
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHC
ADRGHKARDGRTPADIARHYGHAEVAAELDGDRTSVTGKM
CCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792869 [H]