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The map label for this gene is rhaS [C]

Identifier: 116626382

GI number: 116626382

Start: 9221522

End: 9222466

Strand: Direct

Name: rhaS [C]

Synonym: Acid_7342

Alternate gene names: 116626382

Gene position: 9221522-9222466 (Clockwise)

Preceding gene: 116626378

Following gene: 116626383

Centisome position: 92.53

GC content: 66.03

Gene sequence:

>945_bases
ATGGCGTCTCCGCTCAACCGGCTCTCCGCCCCGCTCGGCGTCCGCAACGCCGTGTTGTGCGCCAGTGCACGCCGCCATTC
CGTGACCGATTTTCCCGGCCCCCTCAGCATCAAGAGCGTCACCAGCGGCATGGTGACGTGGAAGAGCGGCGGGCGCGAAC
TCGTGGTGGATCGCGACTCCTTCCTGCTGCTCCATGCCGGGGAGCCCTACTCGATGAATATCGACGCGCGCGAGCCGGTA
TCCACCCTGTGCGTCTTCTTTGCCCCCGGCTTCGTCGAGTCGGTCTGCGGCTCGATCCTGCGTGAAGACCTGGAGCCGGC
CTCCGAGGAACCGGCGTTCGTCCAGCAACTCCATCCCGCCGACGCACGCATCCTGCCGCGCATGCATGCCCTCACACAGG
CGAAGTTCAGCGATCCGCTTTGGATGGACCAGCAGTACCTCGAACTTGCAAGCGATCTGGCGATGTTGAATCGCGATCTG
CGGCGCCGCGTGAACCTCATGCCCGCCCGCCGTGCCGCCACGCGCGAGGAATTATTCCGCCGGGTTCGCCGCGGCCAGGA
ATTCCTCCACGCCACCGCCGCGGAATCCATCGCGCTCGAGGATCTCGCACGCGAGGCCTGCCTCTCGCCCTACCATCTGC
ACCGCGCCTTTACCCACGCATTCGGCAAGACACCGCACGAGTATCGCACCGGGCTCCGCCTCTCCCGCGCCCGCCGCCTG
CTGGAATCGTCGTCGTTGACGGTCAGCGAAGTCTGCGCCGCCGTCGGCTTCGAGAGCCTCCCTTCCTTCAGCACCCTCTT
CCGCCGCACCTTCGGCCACCCGCCATCAAAGTGGGATAGGCCTCCTGGCCTGTCCAGCCGAGCTTGCTCGGCCGCGCGCC
TGGCGCAGAACGAGCGAATTTCGCAAGATCCGATAAGACGCAAGCCGCATTTCGACCGATACTGA

Upstream 100 bases:

>100_bases
TGGCGGCGCGCATTCCGGCCACTCCGGCTCCGATTACCAGAAAATCCGGATTCATCTGCTGCTGCCAGCATAGCAGGGGC
TCTGCTGTAGACTCGAATCC

Downstream 100 bases:

>100_bases
AGCATGCTCTTCGATGCCATTCGACAGGGCGATGCCGACCAGGTCCGCGCACTGCTTGCCGCCGACCCGGCGCTCGCCGA
TTCCCGGACTCCGGAAGGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Regulatory Protein PocR

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MASPLNRLSAPLGVRNAVLCASARRHSVTDFPGPLSIKSVTSGMVTWKSGGRELVVDRDSFLLLHAGEPYSMNIDAREPV
STLCVFFAPGFVESVCGSILREDLEPASEEPAFVQQLHPADARILPRMHALTQAKFSDPLWMDQQYLELASDLAMLNRDL
RRRVNLMPARRAATREELFRRVRRGQEFLHATAAESIALEDLAREACLSPYHLHRAFTHAFGKTPHEYRTGLRLSRARRL
LESSSLTVSEVCAAVGFESLPSFSTLFRRTFGHPPSKWDRPPGLSSRACSAARLAQNERISQDPIRRKPHFDRY

Sequences:

>Translated_314_residues
MASPLNRLSAPLGVRNAVLCASARRHSVTDFPGPLSIKSVTSGMVTWKSGGRELVVDRDSFLLLHAGEPYSMNIDAREPV
STLCVFFAPGFVESVCGSILREDLEPASEEPAFVQQLHPADARILPRMHALTQAKFSDPLWMDQQYLELASDLAMLNRDL
RRRVNLMPARRAATREELFRRVRRGQEFLHATAAESIALEDLAREACLSPYHLHRAFTHAFGKTPHEYRTGLRLSRARRL
LESSSLTVSEVCAAVGFESLPSFSTLFRRTFGHPPSKWDRPPGLSSRACSAARLAQNERISQDPIRRKPHFDRY
>Mature_313_residues
ASPLNRLSAPLGVRNAVLCASARRHSVTDFPGPLSIKSVTSGMVTWKSGGRELVVDRDSFLLLHAGEPYSMNIDAREPVS
TLCVFFAPGFVESVCGSILREDLEPASEEPAFVQQLHPADARILPRMHALTQAKFSDPLWMDQQYLELASDLAMLNRDLR
RRVNLMPARRAATREELFRRVRRGQEFLHATAAESIALEDLAREACLSPYHLHRAFTHAFGKTPHEYRTGLRLSRARRLL
ESSSLTVSEVCAAVGFESLPSFSTLFRRTFGHPPSKWDRPPGLSSRACSAARLAQNERISQDPIRRKPHFDRY

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35275; Mature: 35144

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPLNRLSAPLGVRNAVLCASARRHSVTDFPGPLSIKSVTSGMVTWKSGGRELVVDRDS
CCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEECCCCCEEEEECCC
FLLLHAGEPYSMNIDAREPVSTLCVFFAPGFVESVCGSILREDLEPASEEPAFVQQLHPA
EEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC
DARILPRMHALTQAKFSDPLWMDQQYLELASDLAMLNRDLRRRVNLMPARRAATREELFR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RVRRGQEFLHATAAESIALEDLAREACLSPYHLHRAFTHAFGKTPHEYRTGLRLSRARRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LESSSLTVSEVCAAVGFESLPSFSTLFRRTFGHPPSKWDRPPGLSSRACSAARLAQNERI
HHHCCCCHHHHHHHHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
SQDPIRRKPHFDRY
CCCCHHCCCCCCCC
>Mature Secondary Structure 
ASPLNRLSAPLGVRNAVLCASARRHSVTDFPGPLSIKSVTSGMVTWKSGGRELVVDRDS
CCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEECCCCCEEEEECCC
FLLLHAGEPYSMNIDAREPVSTLCVFFAPGFVESVCGSILREDLEPASEEPAFVQQLHPA
EEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC
DARILPRMHALTQAKFSDPLWMDQQYLELASDLAMLNRDLRRRVNLMPARRAATREELFR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RVRRGQEFLHATAAESIALEDLAREACLSPYHLHRAFTHAFGKTPHEYRTGLRLSRARRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LESSSLTVSEVCAAVGFESLPSFSTLFRRTFGHPPSKWDRPPGLSSRACSAARLAQNERI
HHHCCCCHHHHHHHHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
SQDPIRRKPHFDRY
CCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA