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The map label for this gene is appB [H]

Identifier: 116625733

GI number: 116625733

Start: 8384555

End: 8385583

Strand: Direct

Name: appB [H]

Synonym: Acid_6682

Alternate gene names: 116625733

Gene position: 8384555-8385583 (Clockwise)

Preceding gene: 116625732

Following gene: 116625734

Centisome position: 84.13

GC content: 63.27

Gene sequence:

>1029_bases
ATGGATATGGAAACCATCTGGTTCTGCCTGATCGCCGCCATGCTCGCCACCTACGTGGTGCTGGACGGGTTCGATCTCGG
CGCCGGCGTCGCTCACCTCCTGATCGCGCGCACCGATGCCGAACGCCGCCTCGTGCTCCGCTCCATCGGTCCCGTATGGG
ATGGCAACGAGGTATGGCTCCTGGCCGCTGGCGGCACCCTCTACTTTGCCTTCCCCGCCCTCTATGCCTCCAGCTTCAGC
GGCTTCTACCTGCCGCTCATGATCGTGCTCTGGCTCCTGATCCTGCGCGGCATCTCCATCGAATTCCGCAATCACGTCGA
AAGCCTGGTCTGGCATCCGCTGTGGGACGCCGTCTTCGCTGGTTCCAGCGCCCTGCTCGCCATCTTCTTCGGCGCCGCGC
TTGGCAACGTGGTCCGTGGTGTTCCCCTCGATCAGGCAGGCGATTTCTTCCTGCCCCTCTGGACCAATTTCTCCCCCGGC
CAGGACGCCGGCATCCTGGATTGGTACACCATCCTGATCGCGTTGGCCGCGCTGCTCACGCTCACAGTGCACGGAGCTTT
GTGGATCGCGCTCAAGAACGAAGGCACGGTCGAACACCGCGCTCAGTCGCTCGCCTCGCGCGCATGGTGGGCCATCCTCG
CCGCCGTCATCGCGATTACGCTCGTCAGCTTCCGCATCCAGCCGCACTTGCAGGAGAGTTTCACCGCCCGTCCGTGGTGC
TACATCTTCCCGCTGATCGCGCTCGTCGGACTGATCGGCATCATCGTCATGAACCGGGCTCGACGCGCCCTGGACGCCTT
CATTGCGTCCTGCCTCTTCATTGTCGGCATGCTGACCAGCGTCGCCGCCGGTCTTTATCCCTATGTGCTCCCCTCTAATG
CCGACCCGGCGCGCTCGCTGACCATCGTCAATGCCGCCGCCCCGCGCTACGGCCTGGAGGTCGGCCTGATGTGGTTTATC
CCAGGAATTCTGCTGACCACGGCATACTTCTTCTACACCTATCGGAGTTTCGCCGGAAAGCTGCGCTAA

Upstream 100 bases:

>100_bases
CTGATCGGCTTCATGGGCATCTACTCCGTGCTCGCTGTTCTGTTCCTCTTCCTGGTTTATCGCGAAATCGAGGAGGGGCC
CGAACACCTGGCCGCCTGAC

Downstream 100 bases:

>100_bases
CCCTCGCCCGTTTACACAACCTTACACATTGCCTTTTAGGTTCTGTAACTCCTTTTGAGCTACATTAGTAGTTCGGGCAG
CTCATGGCATTTCCCAGCTC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MDMETIWFCLIAAMLATYVVLDGFDLGAGVAHLLIARTDAERRLVLRSIGPVWDGNEVWLLAAGGTLYFAFPALYASSFS
GFYLPLMIVLWLLILRGISIEFRNHVESLVWHPLWDAVFAGSSALLAIFFGAALGNVVRGVPLDQAGDFFLPLWTNFSPG
QDAGILDWYTILIALAALLTLTVHGALWIALKNEGTVEHRAQSLASRAWWAILAAVIAITLVSFRIQPHLQESFTARPWC
YIFPLIALVGLIGIIVMNRARRALDAFIASCLFIVGMLTSVAAGLYPYVLPSNADPARSLTIVNAAAPRYGLEVGLMWFI
PGILLTTAYFFYTYRSFAGKLR

Sequences:

>Translated_342_residues
MDMETIWFCLIAAMLATYVVLDGFDLGAGVAHLLIARTDAERRLVLRSIGPVWDGNEVWLLAAGGTLYFAFPALYASSFS
GFYLPLMIVLWLLILRGISIEFRNHVESLVWHPLWDAVFAGSSALLAIFFGAALGNVVRGVPLDQAGDFFLPLWTNFSPG
QDAGILDWYTILIALAALLTLTVHGALWIALKNEGTVEHRAQSLASRAWWAILAAVIAITLVSFRIQPHLQESFTARPWC
YIFPLIALVGLIGIIVMNRARRALDAFIASCLFIVGMLTSVAAGLYPYVLPSNADPARSLTIVNAAAPRYGLEVGLMWFI
PGILLTTAYFFYTYRSFAGKLR
>Mature_342_residues
MDMETIWFCLIAAMLATYVVLDGFDLGAGVAHLLIARTDAERRLVLRSIGPVWDGNEVWLLAAGGTLYFAFPALYASSFS
GFYLPLMIVLWLLILRGISIEFRNHVESLVWHPLWDAVFAGSSALLAIFFGAALGNVVRGVPLDQAGDFFLPLWTNFSPG
QDAGILDWYTILIALAALLTLTVHGALWIALKNEGTVEHRAQSLASRAWWAILAAVIAITLVSFRIQPHLQESFTARPWC
YIFPLIALVGLIGIIVMNRARRALDAFIASCLFIVGMLTSVAAGLYPYVLPSNADPARSLTIVNAAAPRYGLEVGLMWFI
PGILLTTAYFFYTYRSFAGKLR

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=364, Percent_Identity=30.2197802197802, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1786954, Length=358, Percent_Identity=28.7709497206704, Blast_Score=148, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37635; Mature: 37635

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMETIWFCLIAAMLATYVVLDGFDLGAGVAHLLIARTDAERRLVLRSIGPVWDGNEVWL
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEE
LAAGGTLYFAFPALYASSFSGFYLPLMIVLWLLILRGISIEFRNHVESLVWHPLWDAVFA
EEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
GSSALLAIFFGAALGNVVRGVPLDQAGDFFLPLWTNFSPGQDAGILDWYTILIALAALLT
CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
LTVHGALWIALKNEGTVEHRAQSLASRAWWAILAAVIAITLVSFRIQPHLQESFTARPWC
HHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHH
YIFPLIALVGLIGIIVMNRARRALDAFIASCLFIVGMLTSVAAGLYPYVLPSNADPARSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCEE
TIVNAAAPRYGLEVGLMWFIPGILLTTAYFFYTYRSFAGKLR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDMETIWFCLIAAMLATYVVLDGFDLGAGVAHLLIARTDAERRLVLRSIGPVWDGNEVWL
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEE
LAAGGTLYFAFPALYASSFSGFYLPLMIVLWLLILRGISIEFRNHVESLVWHPLWDAVFA
EEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
GSSALLAIFFGAALGNVVRGVPLDQAGDFFLPLWTNFSPGQDAGILDWYTILIALAALLT
CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
LTVHGALWIALKNEGTVEHRAQSLASRAWWAILAAVIAITLVSFRIQPHLQESFTARPWC
HHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHH
YIFPLIALVGLIGIIVMNRARRALDAFIASCLFIVGMLTSVAAGLYPYVLPSNADPARSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCEE
TIVNAAAPRYGLEVGLMWFIPGILLTTAYFFYTYRSFAGKLR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]