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The map label for this gene is cydA [H]

Identifier: 116625732

GI number: 116625732

Start: 8383228

End: 8384553

Strand: Direct

Name: cydA [H]

Synonym: Acid_6681

Alternate gene names: 116625732

Gene position: 8383228-8384553 (Clockwise)

Preceding gene: 116625731

Following gene: 116625733

Centisome position: 84.12

GC content: 62.22

Gene sequence:

>1326_bases
ATGGATGCCCTAACCCTACACCGCCTGCACTTCGCCTTCACCATCACCTTTCACTATCTCTTTCCGCAATTGACCATGGG
GCTCGCGCTCCTCATCCTCGTGCTCAAGACGATCGCGCTTCGCACCGGCGACGAGCACTACGCGAACGCCGCGCGCTTCT
GGGCCAAAATCTTCGCCGTGAATTTCGCCATGGGCGTGGTCACCGGCATCCCGATGGAATTCCAGTTCGGTACTAACTGG
TCGCGCTTCTCACGGTTCGCCGGCGGCATCATCGGCCAGACCCTGGCGATGGAGGGCGTCTTCAGCTTCTTCCTCGAATC
CAGCTTCCTCGGCGTCTTCCTCTTCGGTGAGAAGCGCCTCAGCCCCAAAGCCCACTGGTTCGCCGCCTTCCTCGTCTTCC
TCGGCTCCTGGCTCTCCGGCTTCTTCATCATCGCCACCGACGCGTGGATGCAGCACCCCACCGGCTACCGCCTCGGCCCC
AACGGCGAGATCCTGCTTTCCAGCTTCGCCGCCATCTTCACCAACCCGTGGCTCTTCTGGCAGTATTGGCACAACATGAT
CGGCGCCGTGGTTACCGGCTCCTTCGTTATGGCGGCCGTCGGCTCTTTCTATCTGCTCTCGCGGACCCACGAGGAATACG
GACGCACCTTCGTCCGCCTCGGCGTGATCTCCGGCGCCATCGCCACCGTATTGATGCTCTTCCCCACCGGCGACCAGCAG
GGCAAGAACGTCGCCTTCCACCAGCCCTCCACGCTGGCCGCGATGGAGGGACTCTTCGATACCGAGAATGGCGCGCCGCT
CGTGATTCTCGGGCAGCCCGACCTCGAAAAGCGCCGCCTCGATAATCCCCTGGCCGTGCCACGAATGCTCAGCTTCCTCA
CCTACCAGCGATGGCATGCCCGGGTGCGCGGCCTCGATTCTTTCCCGCCCAATCAACTGCCTGATAACATTCCGCTGCTC
TATTACAGCTATCACATCATGGTCGGTCTCGGGACCATCCTGATCGGTGTCATGGCGCTCTCCGTGTTTGCCCTGTGGCG
CAGGAAACTCTACGGTTCACGCCCGCTGTTGTGGATGCTGATGCTCATGCTGCCCTTCCCCTACATCGCCACCACCGCCG
GTTGGATGACCGCTGAGCTCGGCCGTCAGCCCTGGCTGATCTACGGGTTGATGCGCACCGCCGGCGGCTTCTCGCCCCAC
GTCTCCCCCGGCAACACGCTCTTCACCCTGATCGGCTTCATGGGCATCTACTCCGTGCTCGCTGTTCTGTTCCTCTTCCT
GGTTTATCGCGAAATCGAGGAGGGGCCCGAACACCTGGCCGCCTGA

Upstream 100 bases:

>100_bases
ACCTGGACCTGGACCAAAGGTCACGCCAGCCATGCCGATAACAATCGCTGCGACGAACTTGCCACTCGCGCCGCCCGGGA
GCAGTCCAAAAGCTAATTAG

Downstream 100 bases:

>100_bases
CATGGATATGGAAACCATCTGGTTCTGCCTGATCGCCGCCATGCTCGCCACCTACGTGGTGCTGGACGGGTTCGATCTCG
GCGCCGGCGTCGCTCACCTC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MDALTLHRLHFAFTITFHYLFPQLTMGLALLILVLKTIALRTGDEHYANAARFWAKIFAVNFAMGVVTGIPMEFQFGTNW
SRFSRFAGGIIGQTLAMEGVFSFFLESSFLGVFLFGEKRLSPKAHWFAAFLVFLGSWLSGFFIIATDAWMQHPTGYRLGP
NGEILLSSFAAIFTNPWLFWQYWHNMIGAVVTGSFVMAAVGSFYLLSRTHEEYGRTFVRLGVISGAIATVLMLFPTGDQQ
GKNVAFHQPSTLAAMEGLFDTENGAPLVILGQPDLEKRRLDNPLAVPRMLSFLTYQRWHARVRGLDSFPPNQLPDNIPLL
YYSYHIMVGLGTILIGVMALSVFALWRRKLYGSRPLLWMLMLMLPFPYIATTAGWMTAELGRQPWLIYGLMRTAGGFSPH
VSPGNTLFTLIGFMGIYSVLAVLFLFLVYREIEEGPEHLAA

Sequences:

>Translated_441_residues
MDALTLHRLHFAFTITFHYLFPQLTMGLALLILVLKTIALRTGDEHYANAARFWAKIFAVNFAMGVVTGIPMEFQFGTNW
SRFSRFAGGIIGQTLAMEGVFSFFLESSFLGVFLFGEKRLSPKAHWFAAFLVFLGSWLSGFFIIATDAWMQHPTGYRLGP
NGEILLSSFAAIFTNPWLFWQYWHNMIGAVVTGSFVMAAVGSFYLLSRTHEEYGRTFVRLGVISGAIATVLMLFPTGDQQ
GKNVAFHQPSTLAAMEGLFDTENGAPLVILGQPDLEKRRLDNPLAVPRMLSFLTYQRWHARVRGLDSFPPNQLPDNIPLL
YYSYHIMVGLGTILIGVMALSVFALWRRKLYGSRPLLWMLMLMLPFPYIATTAGWMTAELGRQPWLIYGLMRTAGGFSPH
VSPGNTLFTLIGFMGIYSVLAVLFLFLVYREIEEGPEHLAA
>Mature_441_residues
MDALTLHRLHFAFTITFHYLFPQLTMGLALLILVLKTIALRTGDEHYANAARFWAKIFAVNFAMGVVTGIPMEFQFGTNW
SRFSRFAGGIIGQTLAMEGVFSFFLESSFLGVFLFGEKRLSPKAHWFAAFLVFLGSWLSGFFIIATDAWMQHPTGYRLGP
NGEILLSSFAAIFTNPWLFWQYWHNMIGAVVTGSFVMAAVGSFYLLSRTHEEYGRTFVRLGVISGAIATVLMLFPTGDQQ
GKNVAFHQPSTLAAMEGLFDTENGAPLVILGQPDLEKRRLDNPLAVPRMLSFLTYQRWHARVRGLDSFPPNQLPDNIPLL
YYSYHIMVGLGTILIGVMALSVFALWRRKLYGSRPLLWMLMLMLPFPYIATTAGWMTAELGRQPWLIYGLMRTAGGFSPH
VSPGNTLFTLIGFMGIYSVLAVLFLFLVYREIEEGPEHLAA

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=505, Percent_Identity=30.0990099009901, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1787212, Length=507, Percent_Identity=31.9526627218935, Blast_Score=231, Evalue=6e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49566; Mature: 49566

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]