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The map label for this gene is ygdD [C]

Identifier: 116624574

GI number: 116624574

Start: 6893358

End: 6893732

Strand: Reverse

Name: ygdD [C]

Synonym: Acid_5498

Alternate gene names: 116624574

Gene position: 6893732-6893358 (Counterclockwise)

Preceding gene: 116624580

Following gene: 116624573

Centisome position: 69.18

GC content: 61.6

Gene sequence:

>375_bases
ATGAACTGGAGTGCGATCGGAGCGGTCTTTCTGGCGCTGGCGGTAATTCTGGGCGCTTTCGGCGCGCACGGGCTGAAAGA
CCGGCTGGATGCCTATTCGCTGAGCGTTTGGGAGAAGGCAGTGTTCTACCATTTCATTCACGCGATGGGAGTGCTGGTGG
TTTCACTGCTGCCGAAGACCGGCACCTTTCCAGTGGCCGGGGCGTCGCTGGTGGCGTGGCTGCTCACCGCGGGGATCCTG
ATCTTCTCGGGCAGCCTGTACCTGCTTGCCGTCACCGGCGTGCATACACTGGGCGCGATCACGCCGATTGGCGGCGTCTG
CTTTATCGCGGCTTGGCTGCTGCTTGCTTACTACTTCATCGCGCAACGGGCATAG

Upstream 100 bases:

>100_bases
CAGGATGGCGAACAGCGAGAATCGAAACATCTCTGGCCATGATATCGGATGGCATCCGTGGGTTTTGCATCCGTGGATAA
TGGAAGGGCGAGGAGAACGA

Downstream 100 bases:

>100_bases
ACTCATGAACAATCACCAGGTGGACCTGGCCTCGATCGCCAGGCAGGAAATGATTGACCACGGCTTCCAGCCCGACATGC
CGCCGGAAGCCACCCAACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MNWSAIGAVFLALAVILGAFGAHGLKDRLDAYSLSVWEKAVFYHFIHAMGVLVVSLLPKTGTFPVAGASLVAWLLTAGIL
IFSGSLYLLAVTGVHTLGAITPIGGVCFIAAWLLLAYYFIAQRA

Sequences:

>Translated_124_residues
MNWSAIGAVFLALAVILGAFGAHGLKDRLDAYSLSVWEKAVFYHFIHAMGVLVVSLLPKTGTFPVAGASLVAWLLTAGIL
IFSGSLYLLAVTGVHTLGAITPIGGVCFIAAWLLLAYYFIAQRA
>Mature_124_residues
MNWSAIGAVFLALAVILGAFGAHGLKDRLDAYSLSVWEKAVFYHFIHAMGVLVVSLLPKTGTFPVAGASLVAWLLTAGIL
IFSGSLYLLAVTGVHTLGAITPIGGVCFIAAWLLLAYYFIAQRA

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI193203406, Length=104, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13111; Mature: 13111

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWSAIGAVFLALAVILGAFGAHGLKDRLDAYSLSVWEKAVFYHFIHAMGVLVVSLLPKT
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GTFPVAGASLVAWLLTAGILIFSGSLYLLAVTGVHTLGAITPIGGVCFIAAWLLLAYYFI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AQRA
HHCC
>Mature Secondary Structure
MNWSAIGAVFLALAVILGAFGAHGLKDRLDAYSLSVWEKAVFYHFIHAMGVLVVSLLPKT
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GTFPVAGASLVAWLLTAGILIFSGSLYLLAVTGVHTLGAITPIGGVCFIAAWLLLAYYFI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AQRA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA