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The map label for this gene is rarA [H]

Identifier: 116624471

GI number: 116624471

Start: 6756714

End: 6758018

Strand: Reverse

Name: rarA [H]

Synonym: Acid_5393

Alternate gene names: 116624471

Gene position: 6758018-6756714 (Counterclockwise)

Preceding gene: 116624472

Following gene: 116624469

Centisome position: 67.81

GC content: 65.9

Gene sequence:

>1305_bases
GTGAGCCTGTTCGATACCACACCCCCGGATGTCCGCGACGAGAAGCGCCCGCTGGCCGATCGCATGCGACCCACCAGCCT
GGACGAGTACATCGGCCAGGACCACATCCTGGGCCCCGGCAAGCCGCTGCGCCGCCAGATCGAGCGCGATGAGCTGACCT
CCATCATCCTGTGGGGTCCGCCGGGCGTCGGCAAAACCACGCTCGCGCACCTCATTGCCAAGGTCACCAAGTGCGAGTTC
ATCCCCTTCAGCGCGGTGCTGAGCGGCATGAAGGAGATCAAGGCCGTGATGGTGGATGCCGAGAAGCTGCGGCGGCTGGG
GCGGCGCACCATCCTCTTCGTCGACGAGATCCACCGCTTCAACAAGGCGCAGCAGGATGCCTTCCTGCCGTACGTGGAAC
GCGGCGACATCATCCTGATCGGCGCCACTACCGAGAACCCGAGCTTCGAGGTGATCGCCGCGCTGCTCTCGCGCTCGCGC
GTCTACGCGCTGCGCGCCTTCACCGTGCCCGAGATCGTCACCATGCTCAAGCGCGCGCTGCCGGTGCTGCACCTGCAGGC
GTCCGACGACTTACTGGAACAGATCGGCATCTACTCCAACGGCGATGGCCGCCAGGCGTACAACACGCTGGAAGCGGCCG
CCGCCGCATCCAGCGGCGGCGAGCTGACCGAAGAGGCCGTGCAGGACGCCATGCAGCGCAAGGTGCTGCTCTATGACAAG
GGCGGGGAAGAGCACTTCAACCTGATCTCAGCGCTCCACAAGTCCGTGCGCTCGAGCGATGTGGACGCGGCGCTCTACTG
GCTGACCCGCATGCTCGAAGCCGGCGAAGACCGCATGTACATCGCGCGCCGCCTGGTGCGCATGGCGATCGAGGACATCA
GCCTCGCCGACCCGCGCGCGCTCGAGCAGTGTATCGCCGCCATGCAGGCCGTCCACTTCCTCGGCATTCCCGAAGGCGAC
CTGGCACTGGGACAGGCCGCCATCTATCTCTCGATAGCCCCCAAGTCCGACGCCGCTTACCGCGCCATGGGGGCCGTCAA
AGAAGACGTGGAGAAGACCATCGCTGAGCCGGTACCGATGCGCCTGCGCAACGCCCCCACCAAAGCGATGAAGCAGTGGG
GCTACGGGGAAGGCTACCAGCACGCCCACCAGTTCGCCGACGCGGTGCCGGGAATGGAGTGTCTGCCGGACTCGCTCGCC
GGCACGCAGTACTACCACCCGACCGATCGCGGCATGGAGAAGAGAATACGGGAGAGGTTGGAGGAGATACGGAAACTCAG
GGAGGGAGGACCCCTCCCCACTTGA

Upstream 100 bases:

>100_bases
CTGCCCATGACGTGAGCATTCCGACAGTGGGCGTGGAATCGCTGAATGCGGCGATGGCGGCCTCCATTCTGCTCTATGAA
GCGCGCCGCCAGAGGATGCT

Downstream 100 bases:

>100_bases
TCACTTCTTGTTCAGCTTGAGATTGATGACGGCCTGTTTCCTGGAATCGAAGGAACTCAGGGTCTTCGCACCGCTGGTAG
CGCCCGAAAGGTCCGCCTTG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSLFDTTPPDVRDEKRPLADRMRPTSLDEYIGQDHILGPGKPLRRQIERDELTSIILWGPPGVGKTTLAHLIAKVTKCEF
IPFSAVLSGMKEIKAVMVDAEKLRRLGRRTILFVDEIHRFNKAQQDAFLPYVERGDIILIGATTENPSFEVIAALLSRSR
VYALRAFTVPEIVTMLKRALPVLHLQASDDLLEQIGIYSNGDGRQAYNTLEAAAAASSGGELTEEAVQDAMQRKVLLYDK
GGEEHFNLISALHKSVRSSDVDAALYWLTRMLEAGEDRMYIARRLVRMAIEDISLADPRALEQCIAAMQAVHFLGIPEGD
LALGQAAIYLSIAPKSDAAYRAMGAVKEDVEKTIAEPVPMRLRNAPTKAMKQWGYGEGYQHAHQFADAVPGMECLPDSLA
GTQYYHPTDRGMEKRIRERLEEIRKLREGGPLPT

Sequences:

>Translated_434_residues
MSLFDTTPPDVRDEKRPLADRMRPTSLDEYIGQDHILGPGKPLRRQIERDELTSIILWGPPGVGKTTLAHLIAKVTKCEF
IPFSAVLSGMKEIKAVMVDAEKLRRLGRRTILFVDEIHRFNKAQQDAFLPYVERGDIILIGATTENPSFEVIAALLSRSR
VYALRAFTVPEIVTMLKRALPVLHLQASDDLLEQIGIYSNGDGRQAYNTLEAAAAASSGGELTEEAVQDAMQRKVLLYDK
GGEEHFNLISALHKSVRSSDVDAALYWLTRMLEAGEDRMYIARRLVRMAIEDISLADPRALEQCIAAMQAVHFLGIPEGD
LALGQAAIYLSIAPKSDAAYRAMGAVKEDVEKTIAEPVPMRLRNAPTKAMKQWGYGEGYQHAHQFADAVPGMECLPDSLA
GTQYYHPTDRGMEKRIRERLEEIRKLREGGPLPT
>Mature_433_residues
SLFDTTPPDVRDEKRPLADRMRPTSLDEYIGQDHILGPGKPLRRQIERDELTSIILWGPPGVGKTTLAHLIAKVTKCEFI
PFSAVLSGMKEIKAVMVDAEKLRRLGRRTILFVDEIHRFNKAQQDAFLPYVERGDIILIGATTENPSFEVIAALLSRSRV
YALRAFTVPEIVTMLKRALPVLHLQASDDLLEQIGIYSNGDGRQAYNTLEAAAAASSGGELTEEAVQDAMQRKVLLYDKG
GEEHFNLISALHKSVRSSDVDAALYWLTRMLEAGEDRMYIARRLVRMAIEDISLADPRALEQCIAAMQAVHFLGIPEGDL
ALGQAAIYLSIAPKSDAAYRAMGAVKEDVEKTIAEPVPMRLRNAPTKAMKQWGYGEGYQHAHQFADAVPGMECLPDSLAG
TQYYHPTDRGMEKRIRERLEEIRKLREGGPLPT

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=44.4191343963554, Blast_Score=353, Evalue=1e-97,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=40.0911161731207, Blast_Score=299, Evalue=3e-81,
Organism=Escherichia coli, GI1787119, Length=430, Percent_Identity=46.7441860465116, Blast_Score=363, Evalue=1e-101,
Organism=Escherichia coli, GI1788167, Length=227, Percent_Identity=27.3127753303965, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=39.3794749403341, Blast_Score=293, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48334; Mature: 48203

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFDTTPPDVRDEKRPLADRMRPTSLDEYIGQDHILGPGKPLRRQIERDELTSIILWGP
CCCCCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCEEEEECC
PGVGKTTLAHLIAKVTKCEFIPFSAVLSGMKEIKAVMVDAEKLRRLGRRTILFVDEIHRF
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
NKAQQDAFLPYVERGDIILIGATTENPSFEVIAALLSRSRVYALRAFTVPEIVTMLKRAL
HHHHHHHCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PVLHLQASDDLLEQIGIYSNGDGRQAYNTLEAAAAASSGGELTEEAVQDAMQRKVLLYDK
CEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEEEC
GGEEHFNLISALHKSVRSSDVDAALYWLTRMLEAGEDRMYIARRLVRMAIEDISLADPRA
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHH
LEQCIAAMQAVHFLGIPEGDLALGQAAIYLSIAPKSDAAYRAMGAVKEDVEKTIAEPVPM
HHHHHHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCH
RLRNAPTKAMKQWGYGEGYQHAHQFADAVPGMECLPDSLAGTQYYHPTDRGMEKRIRERL
HHCCCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCHHHCCCCCCCCCCCCHHHHHHHHH
EEIRKLREGGPLPT
HHHHHHHCCCCCCC
>Mature Secondary Structure 
SLFDTTPPDVRDEKRPLADRMRPTSLDEYIGQDHILGPGKPLRRQIERDELTSIILWGP
CCCCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCEEEEECC
PGVGKTTLAHLIAKVTKCEFIPFSAVLSGMKEIKAVMVDAEKLRRLGRRTILFVDEIHRF
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
NKAQQDAFLPYVERGDIILIGATTENPSFEVIAALLSRSRVYALRAFTVPEIVTMLKRAL
HHHHHHHCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PVLHLQASDDLLEQIGIYSNGDGRQAYNTLEAAAAASSGGELTEEAVQDAMQRKVLLYDK
CEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEEEC
GGEEHFNLISALHKSVRSSDVDAALYWLTRMLEAGEDRMYIARRLVRMAIEDISLADPRA
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHH
LEQCIAAMQAVHFLGIPEGDLALGQAAIYLSIAPKSDAAYRAMGAVKEDVEKTIAEPVPM
HHHHHHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCH
RLRNAPTKAMKQWGYGEGYQHAHQFADAVPGMECLPDSLAGTQYYHPTDRGMEKRIRERL
HHCCCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCHHHCCCCCCCCCCCCHHHHHHHHH
EEIRKLREGGPLPT
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]