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The map label for this gene is yfgC [C]

Identifier: 116624088

GI number: 116624088

Start: 6310037

End: 6310921

Strand: Reverse

Name: yfgC [C]

Synonym: Acid_5002

Alternate gene names: 116624088

Gene position: 6310921-6310037 (Counterclockwise)

Preceding gene: 116624091

Following gene: 116624087

Centisome position: 63.33

GC content: 64.18

Gene sequence:

>885_bases
ATGGCGGGGCGGAGGCATGATCAGGGTATGAGCATGCTGCGTCACGCTTGGATTCTTGTGCTGCCGGTTGCGGGGCTTTT
CGCTCAGGATACTTCGCCGGCGCGGGGCGTCAACTTCTACAGCATTGAGAAGGAGCAGGCGCTCGGGGTGCAACTGGCGA
AAGAATATCGCCGGAATGTCACGGTGATCGAAGACGCGACGGTGAAGACTTACCTGGACGACCTGGGGCAGCGGCTGGCG
GCCAAGGCGCAGGGGCCTGCGTTCACGTATTGCTTCGAGCTGGTGAGCGACGGGGGGATTGTTCTGAATGAGCCGGTGGC
GTTTCCGGGCGGGCTGGTCTTCGTTCCGACGAGCCTGATTCGGGCGGCGAAGAGCGAGGACGAACTTGCCGGCATGCTGG
CGCACGCGATTGAACATATCGCAGCGCGGCACGGGACGAAACAGGCGACGCGTGAAGAAATCGTGAACCAGGCGACGATC
CCGTTGATCTATATGGGCGGATGGTCCGGGAACGCGATACGGCAGGGCACGGAACTGGCGCTTCCTCTGGGTTTCCTGAA
ATTTCACCGGCAGGCCGAACTGCAGGCGGACACACTGGCCGTGCCAACCATGGCGGCCGCGGGGCACGATCCGCGGGCGC
TGGTGAACTACATGGAGCGCGCGCTACCCGCGGACGCGGCGCCGCCATCGGCAATGAGCGCGCTGCCGGGCCGTGAAGTG
CGCCTCAATGCGCTGCGGAAGGCTGTGGAGAGCGTCCCGGCAAACACGTACCCGCCGCACGACGGGTTCGCGGCGATTCA
GCAAGCAGTCGCACGACTCGATGTCAAACCGGCGAAAGTACCTCCGCGTCTGGCCCCGCATATGGCCCCCCATCTGGCAA
GATAG

Upstream 100 bases:

>100_bases
GGTCGCGGGATTGTCGTGTTGGGCGCCGGCGCGGCGGGCAGCTTCGGTTGATCCGAGCGAGGCGCTGAGGTGTGACTGAG
TGCCAGTCGGGTTGAAAGGA

Downstream 100 bases:

>100_bases
TCGGAGGGATGCCAAATACAAAAATTGTAGCCACACTTGGGCCGGCCACAGATGCGCCCGGTGTCTTGCGTCAACTGCTC
GCCGCAGGCGTCGATGTTTT

Product: peptidase M48, Ste24p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MAGRRHDQGMSMLRHAWILVLPVAGLFAQDTSPARGVNFYSIEKEQALGVQLAKEYRRNVTVIEDATVKTYLDDLGQRLA
AKAQGPAFTYCFELVSDGGIVLNEPVAFPGGLVFVPTSLIRAAKSEDELAGMLAHAIEHIAARHGTKQATREEIVNQATI
PLIYMGGWSGNAIRQGTELALPLGFLKFHRQAELQADTLAVPTMAAAGHDPRALVNYMERALPADAAPPSAMSALPGREV
RLNALRKAVESVPANTYPPHDGFAAIQQAVARLDVKPAKVPPRLAPHMAPHLAR

Sequences:

>Translated_294_residues
MAGRRHDQGMSMLRHAWILVLPVAGLFAQDTSPARGVNFYSIEKEQALGVQLAKEYRRNVTVIEDATVKTYLDDLGQRLA
AKAQGPAFTYCFELVSDGGIVLNEPVAFPGGLVFVPTSLIRAAKSEDELAGMLAHAIEHIAARHGTKQATREEIVNQATI
PLIYMGGWSGNAIRQGTELALPLGFLKFHRQAELQADTLAVPTMAAAGHDPRALVNYMERALPADAAPPSAMSALPGREV
RLNALRKAVESVPANTYPPHDGFAAIQQAVARLDVKPAKVPPRLAPHMAPHLAR
>Mature_293_residues
AGRRHDQGMSMLRHAWILVLPVAGLFAQDTSPARGVNFYSIEKEQALGVQLAKEYRRNVTVIEDATVKTYLDDLGQRLAA
KAQGPAFTYCFELVSDGGIVLNEPVAFPGGLVFVPTSLIRAAKSEDELAGMLAHAIEHIAARHGTKQATREEIVNQATIP
LIYMGGWSGNAIRQGTELALPLGFLKFHRQAELQADTLAVPTMAAAGHDPRALVNYMERALPADAAPPSAMSALPGREVR
LNALRKAVESVPANTYPPHDGFAAIQQAVARLDVKPAKVPPRLAPHMAPHLAR

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=254, Percent_Identity=26.3779527559055, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011716
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48; PF07720 TPR_3 [H]

EC number: NA

Molecular weight: Translated: 31710; Mature: 31579

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRRHDQGMSMLRHAWILVLPVAGLFAQDTSPARGVNFYSIEKEQALGVQLAKEYRRNV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCC
TVIEDATVKTYLDDLGQRLAAKAQGPAFTYCFELVSDGGIVLNEPVAFPGGLVFVPTSLI
EEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEHHHHHH
RAAKSEDELAGMLAHAIEHIAARHGTKQATREEIVNQATIPLIYMGGWSGNAIRQGTELA
HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCHHH
LPLGFLKFHRQAELQADTLAVPTMAAAGHDPRALVNYMERALPADAAPPSAMSALPGREV
HHHHHHHHHHHHHCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCHH
RLNALRKAVESVPANTYPPHDGFAAIQQAVARLDVKPAKVPPRLAPHMAPHLAR
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHCCC
>Mature Secondary Structure 
AGRRHDQGMSMLRHAWILVLPVAGLFAQDTSPARGVNFYSIEKEQALGVQLAKEYRRNV
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCC
TVIEDATVKTYLDDLGQRLAAKAQGPAFTYCFELVSDGGIVLNEPVAFPGGLVFVPTSLI
EEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEHHHHHH
RAAKSEDELAGMLAHAIEHIAARHGTKQATREEIVNQATIPLIYMGGWSGNAIRQGTELA
HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCHHH
LPLGFLKFHRQAELQADTLAVPTMAAAGHDPRALVNYMERALPADAAPPSAMSALPGREV
HHHHHHHHHHHHHCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCHH
RLNALRKAVESVPANTYPPHDGFAAIQQAVARLDVKPAKVPPRLAPHMAPHLAR
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]