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The map label for this gene is petB [H]

Identifier: 116623477

GI number: 116623477

Start: 5549904

End: 5550749

Strand: Reverse

Name: petB [H]

Synonym: Acid_4387

Alternate gene names: 116623477

Gene position: 5550749-5549904 (Counterclockwise)

Preceding gene: 116623478

Following gene: 116623476

Centisome position: 55.7

GC content: 58.16

Gene sequence:

>846_bases
ATGGCCGATGCCAAAGCCGTAAAATCGCGCGCCGTAGAGGAACTGAAGGAGACGGTGAAGGCGCCGGAGAAGACCGACGT
CTGGAAGAGCATTCTGCGCGTGAAGCACGATGAGACGCCGCGCAGTCGCGCGCTCGGCGTACTGAGCAACGTGTTTCTGC
ACCTCCATCCGGCGAAGATCAATCGTGACGCGGTGGCCTACAACTATACATGGGGTATGGGCGGAATGACGTTCTACGTG
TACATCACGCTGGTGTTCACGGGAACGCTCCTGATGTTTTATTACCATCCTTCGAAGGTGGTGGCCTTCCGCGACATTTT
GTATTTGGAAAGCGATGTACCGTTCGGCAAACTGCTGCGCAACATGCATCGCTGGGGCGCGCACCTGATGGTGATCATGG
TGGAACTGCATATGTTCCGCGTGTTCCTCACGGGGTCCTATAAGAAACCGCGCGAGTTCAATTGGGTTGTGGGGGTGCTG
CTGCTGGTGCTGACGCTGCTTTTGAGCTTCACCGGATATTTGCTGCCCGACGATCAACTGGGCTTCTGGGCGGTGACGGT
GGGCACCAACATGGCGCGCGCGACGCCGCTGTTGGGGCACGACGGACCCTTCGGCCCGCAAATGGGAATGACGGCGTTCA
ACGACGTGCGTTTCGGGCTGCTGGGCGGCTCGATTGTGGATTCGAACGCGCTGTTGCGCGCGTACATCTGGCACTGCGTG
GCGATCCCGATTATCGCGAGCCTTTTCATGATCGTGCACTTCTGGCGAGTGCGTAAAGACGGCGGAATTTCCGGACCGGC
GCCGATGATGCTGGAAAGCGAAATCAAGGAACCCAAGAAGGTTTAG

Upstream 100 bases:

>100_bases
GCCTGAAACTAACGGACACAGTAACGGCAGCGGTAATGGAAACGGAACCGGCAACGGGAACGGCAACGGCAGCGGGGGCG
TGAAAAAACTCGCGACGGTG

Downstream 100 bases:

>100_bases
ATTATGGACTTCCATCAACTGTGGACCATTCTCAGCACACCGGACAACGTCCCGATTGTGATTCTGCTGCTGGTTGTCCC
GTTCTACACGTGGTATGGGC

Product: cytochrome b/b6 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MADAKAVKSRAVEELKETVKAPEKTDVWKSILRVKHDETPRSRALGVLSNVFLHLHPAKINRDAVAYNYTWGMGGMTFYV
YITLVFTGTLLMFYYHPSKVVAFRDILYLESDVPFGKLLRNMHRWGAHLMVIMVELHMFRVFLTGSYKKPREFNWVVGVL
LLVLTLLLSFTGYLLPDDQLGFWAVTVGTNMARATPLLGHDGPFGPQMGMTAFNDVRFGLLGGSIVDSNALLRAYIWHCV
AIPIIASLFMIVHFWRVRKDGGISGPAPMMLESEIKEPKKV

Sequences:

>Translated_281_residues
MADAKAVKSRAVEELKETVKAPEKTDVWKSILRVKHDETPRSRALGVLSNVFLHLHPAKINRDAVAYNYTWGMGGMTFYV
YITLVFTGTLLMFYYHPSKVVAFRDILYLESDVPFGKLLRNMHRWGAHLMVIMVELHMFRVFLTGSYKKPREFNWVVGVL
LLVLTLLLSFTGYLLPDDQLGFWAVTVGTNMARATPLLGHDGPFGPQMGMTAFNDVRFGLLGGSIVDSNALLRAYIWHCV
AIPIIASLFMIVHFWRVRKDGGISGPAPMMLESEIKEPKKV
>Mature_280_residues
ADAKAVKSRAVEELKETVKAPEKTDVWKSILRVKHDETPRSRALGVLSNVFLHLHPAKINRDAVAYNYTWGMGGMTFYVY
ITLVFTGTLLMFYYHPSKVVAFRDILYLESDVPFGKLLRNMHRWGAHLMVIMVELHMFRVFLTGSYKKPREFNWVVGVLL
LVLTLLLSFTGYLLPDDQLGFWAVTVGTNMARATPLLGHDGPFGPQMGMTAFNDVRFGLLGGSIVDSNALLRAYIWHCVA
IPIIASLFMIVHFWRVRKDGGISGPAPMMLESEIKEPKKV

Specific function: Component of the cytochrome bc complex which donates electrons to the photosynthetic reaction center [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=178, Percent_Identity=32.0224719101124, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6226529, Length=224, Percent_Identity=29.0178571428571, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6226532, Length=207, Percent_Identity=29.4685990338164, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6226531, Length=155, Percent_Identity=32.258064516129, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6226530, Length=146, Percent_Identity=30.1369863013699, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 31763; Mature: 31632

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAKAVKSRAVEELKETVKAPEKTDVWKSILRVKHDETPRSRALGVLSNVFLHLHPAKI
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCCC
NRDAVAYNYTWGMGGMTFYVYITLVFTGTLLMFYYHPSKVVAFRDILYLESDVPFGKLLR
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHH
NMHRWGAHLMVIMVELHMFRVFLTGSYKKPREFNWVVGVLLLVLTLLLSFTGYLLPDDQL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GFWAVTVGTNMARATPLLGHDGPFGPQMGMTAFNDVRFGLLGGSIVDSNALLRAYIWHCV
CEEEEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHH
AIPIIASLFMIVHFWRVRKDGGISGPAPMMLESEIKEPKKV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
ADAKAVKSRAVEELKETVKAPEKTDVWKSILRVKHDETPRSRALGVLSNVFLHLHPAKI
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCCC
NRDAVAYNYTWGMGGMTFYVYITLVFTGTLLMFYYHPSKVVAFRDILYLESDVPFGKLLR
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHH
NMHRWGAHLMVIMVELHMFRVFLTGSYKKPREFNWVVGVLLLVLTLLLSFTGYLLPDDQL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GFWAVTVGTNMARATPLLGHDGPFGPQMGMTAFNDVRFGLLGGSIVDSNALLRAYIWHCV
CEEEEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHH
AIPIIASLFMIVHFWRVRKDGGISGPAPMMLESEIKEPKKV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA