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The map label for this gene is petC [H]

Identifier: 116623478

GI number: 116623478

Start: 5550863

End: 5551459

Strand: Reverse

Name: petC [H]

Synonym: Acid_4388

Alternate gene names: 116623478

Gene position: 5551459-5550863 (Counterclockwise)

Preceding gene: 116623483

Following gene: 116623477

Centisome position: 55.71

GC content: 58.46

Gene sequence:

>597_bases
ATGGCGAATTCTACGTTAGAGCCCGCCGGGTCCGCAACACCTCCGCCGAGGACGAAACCATCTCTGGCTCAGGCGTTCCG
CACAATCTTTTCAAAAAGCGAAGAGACCGACGAAGGCAAAGTGATTGCGCGCAGGCGCAAGTTTGTAATGGCGGCAGTGT
TGGGCACGCTCGGTGTCAATCTGCTGATGTTCCTACGCTTCTTTTTTCCACGCGCGCTCTACGAGCCGAAGACGAAATTC
CGGATCGGGTATCCGGGCGACTTCGGGTTCGGCGTGGACACGAAGTTTCAAAACCAGTACCGGATCTGGGTGGTGCGCAA
CACCGAGGGAATCTTCGTGATCTCGGCGATCTGCACCCACCTGGGCTGCACGCCGGATTGGAAGGCGAGCGAGAATAAAT
TCAAGTGCCCGTGCCACGGCAGCGGCTATGACCCCGAGGGAATCAATTTCGAGGGGCCCGCGCCGCGCCCGATGGATCGG
GCGCATGTGGAACTCGACCCGGAAGGACAGATCCTTGTGGATCTCAGCCATGTGTATAAATGGCCCAAGGGCGAGCCAAG
TCAGTTTAACGACCCGGGCGCAATACTCCGGGTCTGA

Upstream 100 bases:

>100_bases
CAGGCTCCGTTGCCAAACGAGAGCTGCCATTTTGCCACGGCCCGAGCGCGGAACGAGCAACAGCGTAGGCTGGCTGGTCC
AGGTAGTTCGAGGGGACAAG

Downstream 100 bases:

>100_bases
GGGATTTCATCATGCCTGAAACTAACGGACACAGTAACGGCAGCGGTAATGGAAACGGAACCGGCAACGGGAACGGCAAC
GGCAGCGGGGGCGTGAAAAA

Product: Rieske (2Fe-2S) domain-containing protein

Products: NA

Alternate protein names: Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein; ISP; RISP; Rieske iron-sulfur protein [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MANSTLEPAGSATPPPRTKPSLAQAFRTIFSKSEETDEGKVIARRRKFVMAAVLGTLGVNLLMFLRFFFPRALYEPKTKF
RIGYPGDFGFGVDTKFQNQYRIWVVRNTEGIFVISAICTHLGCTPDWKASENKFKCPCHGSGYDPEGINFEGPAPRPMDR
AHVELDPEGQILVDLSHVYKWPKGEPSQFNDPGAILRV

Sequences:

>Translated_198_residues
MANSTLEPAGSATPPPRTKPSLAQAFRTIFSKSEETDEGKVIARRRKFVMAAVLGTLGVNLLMFLRFFFPRALYEPKTKF
RIGYPGDFGFGVDTKFQNQYRIWVVRNTEGIFVISAICTHLGCTPDWKASENKFKCPCHGSGYDPEGINFEGPAPRPMDR
AHVELDPEGQILVDLSHVYKWPKGEPSQFNDPGAILRV
>Mature_197_residues
ANSTLEPAGSATPPPRTKPSLAQAFRTIFSKSEETDEGKVIARRRKFVMAAVLGTLGVNLLMFLRFFFPRALYEPKTKFR
IGYPGDFGFGVDTKFQNQYRIWVVRNTEGIFVISAICTHLGCTPDWKASENKFKCPCHGSGYDPEGINFEGPAPRPMDRA
HVELDPEGQILVDLSHVYKWPKGEPSQFNDPGAILRV

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG0723

COG function: function code C; Rieske Fe-S protein

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein. Note=The transmembrane helix obliquely spans the membrane in one monomer, and its extrinsic C- terminal domain is part of the other monomer (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014909
- InterPro:   IPR017941
- InterPro:   IPR014349
- InterPro:   IPR005805 [H]

Pfam domain/function: PF08802 CytB6-F_Fe-S; PF00355 Rieske [H]

EC number: =1.10.99.1 [H]

Molecular weight: Translated: 22168; Mature: 22036

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00199 RIESKE_1 ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSTLEPAGSATPPPRTKPSLAQAFRTIFSKSEETDEGKVIARRRKFVMAAVLGTLGVN
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLMFLRFFFPRALYEPKTKFRIGYPGDFGFGVDTKFQNQYRIWVVRNTEGIFVISAICTH
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCEEEEEEECCCCEEHHHHHHHH
LGCTPDWKASENKFKCPCHGSGYDPEGINFEGPAPRPMDRAHVELDPEGQILVDLSHVYK
CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEHHHHC
WPKGEPSQFNDPGAILRV
CCCCCCCCCCCCCCEEEC
>Mature Secondary Structure 
ANSTLEPAGSATPPPRTKPSLAQAFRTIFSKSEETDEGKVIARRRKFVMAAVLGTLGVN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLMFLRFFFPRALYEPKTKFRIGYPGDFGFGVDTKFQNQYRIWVVRNTEGIFVISAICTH
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCEEEEEEECCCCEEHHHHHHHH
LGCTPDWKASENKFKCPCHGSGYDPEGINFEGPAPRPMDRAHVELDPEGQILVDLSHVYK
CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEHHHHC
WPKGEPSQFNDPGAILRV
CCCCCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA