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The map label for this gene is rbcR [H]

Identifier: 116623160

GI number: 116623160

Start: 5162201

End: 5163094

Strand: Reverse

Name: rbcR [H]

Synonym: Acid_4066

Alternate gene names: 116623160

Gene position: 5163094-5162201 (Counterclockwise)

Preceding gene: 116623166

Following gene: 116623159

Centisome position: 51.81

GC content: 57.16

Gene sequence:

>894_bases
ATGGAGTCCCGCTTAGCCTTCAACATGGAACTCCATTCCCTTCAGGTATTTCACGCGGTTGCCACCGAAAAGAGCTTTTC
GCGCGCCGCGGAAAAACTGCTGCGCACACAGCCTGCGGTATCGCTGGCGCTGCAGCGGCTGGAGCAGGAGTTGGGGGAGA
AACTGATCGATCGCTCAGGAAAGGACCTGATCCTGACCGATGCGGGACGTACGGTATTGGACTATGCGCGCCGGTTTCAG
AGCCTGCAACTGGAGATGGAGAACTCGATCGCGGAGCTGCGCGACAATTCGGCGGGTAAGCTCACCATCGGCGCCAACGA
ATCGACCACGCTTTATCTGTTGAAGCACATCGAAAAATACCGTGAACTCTATCCTAAGGTGAAGGTGCAGGTGCGGCGAA
GCCTCAGCAGCATGCTGCCCAACGAACTGCTTGACGGCAATCTCGAACTCGGCGTGATCAGCTACGATCCTGCCGACGAG
CGCATCAAGTCGAAGGTGATCTTCACCGACGCACTGGCCTTCGTCGTATCCCCCAAGCACCGCCTGGCCAACCGCAAGAC
CGTTCCGATTACGGAGTTGGGGAGCGAGAATTTCATCGCGCACAACGTGCTCTCGCCGTATCGCGCCGTGGTGATCCGCG
AATTTCAAACTCACAAAGTACCGCTCCACATGGACGTGGAGATGCCGACGATAGAGACCATCCGCAAGCTGGTGCAAAGT
AATCTCGGCGTCGCATTTCTGCCGCGTATGTGCGTGGAGCAGGAGATTGAGCAAAAGATGCTTTGCGAGGTGCGCGTGAA
AGAGATGCACGTGGAGAGGAAGATCCGGCTGATTTATCCGACACGCCGCGGCCTCAGTCACGCGGCTAAAGCCTTCCTTG
AAGTGGTCGGCTAA

Upstream 100 bases:

>100_bases
AAATGTATACTCGATCGCTCACAAGAGCATTATCGCGGTCCCGTGTTCGATTTGGCAAATTTATAATATTAGCGGTCCAT
ATTAACGTATGTTATAGTGA

Downstream 100 bases:

>100_bases
CCCGGGCTTGGGCTCTCGACGAGAATCCATTCTAATCACCATACGTACGCGCCCCTCCGAGCCGTGACCGTTAGGGAGCG
GTCGCTAATATCGGGAGATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MESRLAFNMELHSLQVFHAVATEKSFSRAAEKLLRTQPAVSLALQRLEQELGEKLIDRSGKDLILTDAGRTVLDYARRFQ
SLQLEMENSIAELRDNSAGKLTIGANESTTLYLLKHIEKYRELYPKVKVQVRRSLSSMLPNELLDGNLELGVISYDPADE
RIKSKVIFTDALAFVVSPKHRLANRKTVPITELGSENFIAHNVLSPYRAVVIREFQTHKVPLHMDVEMPTIETIRKLVQS
NLGVAFLPRMCVEQEIEQKMLCEVRVKEMHVERKIRLIYPTRRGLSHAAKAFLEVVG

Sequences:

>Translated_297_residues
MESRLAFNMELHSLQVFHAVATEKSFSRAAEKLLRTQPAVSLALQRLEQELGEKLIDRSGKDLILTDAGRTVLDYARRFQ
SLQLEMENSIAELRDNSAGKLTIGANESTTLYLLKHIEKYRELYPKVKVQVRRSLSSMLPNELLDGNLELGVISYDPADE
RIKSKVIFTDALAFVVSPKHRLANRKTVPITELGSENFIAHNVLSPYRAVVIREFQTHKVPLHMDVEMPTIETIRKLVQS
NLGVAFLPRMCVEQEIEQKMLCEVRVKEMHVERKIRLIYPTRRGLSHAAKAFLEVVG
>Mature_297_residues
MESRLAFNMELHSLQVFHAVATEKSFSRAAEKLLRTQPAVSLALQRLEQELGEKLIDRSGKDLILTDAGRTVLDYARRFQ
SLQLEMENSIAELRDNSAGKLTIGANESTTLYLLKHIEKYRELYPKVKVQVRRSLSSMLPNELLDGNLELGVISYDPADE
RIKSKVIFTDALAFVVSPKHRLANRKTVPITELGSENFIAHNVLSPYRAVVIREFQTHKVPLHMDVEMPTIETIRKLVQS
NLGVAFLPRMCVEQEIEQKMLCEVRVKEMHVERKIRLIYPTRRGLSHAAKAFLEVVG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=28.5223367697594, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=29.0657439446367, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082132, Length=292, Percent_Identity=24.6575342465753, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=24.5733788395904, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=28.3737024221453, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788626, Length=247, Percent_Identity=28.7449392712551, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790399, Length=279, Percent_Identity=23.2974910394265, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=28.719723183391, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI145693105, Length=247, Percent_Identity=25.1012145748988, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=25.2747252747253, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787601, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789204, Length=287, Percent_Identity=24.7386759581882, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=27.8225806451613, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787806, Length=249, Percent_Identity=24.8995983935743, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=238, Percent_Identity=24.7899159663866, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=303, Percent_Identity=24.4224422442244, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI2367136, Length=196, Percent_Identity=25.5102040816327, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=232, Percent_Identity=26.7241379310345, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33873; Mature: 33873

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRLAFNMELHSLQVFHAVATEKSFSRAAEKLLRTQPAVSLALQRLEQELGEKLIDRSG
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
KDLILTDAGRTVLDYARRFQSLQLEMENSIAELRDNSAGKLTIGANESTTLYLLKHIEKY
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
RELYPKVKVQVRRSLSSMLPNELLDGNLELGVISYDPADERIKSKVIFTDALAFVVSPKH
HHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHH
RLANRKTVPITELGSENFIAHNVLSPYRAVVIREFQTHKVPLHMDVEMPTIETIRKLVQS
HHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
NLGVAFLPRMCVEQEIEQKMLCEVRVKEMHVERKIRLIYPTRRGLSHAAKAFLEVVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MESRLAFNMELHSLQVFHAVATEKSFSRAAEKLLRTQPAVSLALQRLEQELGEKLIDRSG
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
KDLILTDAGRTVLDYARRFQSLQLEMENSIAELRDNSAGKLTIGANESTTLYLLKHIEKY
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
RELYPKVKVQVRRSLSSMLPNELLDGNLELGVISYDPADERIKSKVIFTDALAFVVSPKH
HHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHH
RLANRKTVPITELGSENFIAHNVLSPYRAVVIREFQTHKVPLHMDVEMPTIETIRKLVQS
HHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
NLGVAFLPRMCVEQEIEQKMLCEVRVKEMHVERKIRLIYPTRRGLSHAAKAFLEVVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]