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The map label for this gene is hslR [H]

Identifier: 116623159

GI number: 116623159

Start: 5161600

End: 5162007

Strand: Reverse

Name: hslR [H]

Synonym: Acid_4065

Alternate gene names: 116623159

Gene position: 5162007-5161600 (Counterclockwise)

Preceding gene: 116623160

Following gene: 116623158

Centisome position: 51.8

GC content: 64.22

Gene sequence:

>408_bases
GTGAGGATTATCGTCGAGAATAGTCCTATGGACGGCGTGAGGATGGACAAGTGGCTGTGGGCCGCGCGATTTTTTAAGAC
GCGCTCGCTCGCCTCGAAAGCCTGCGAGCTCGGCCGCATCGAATCCAACGGACAGCCGGCCAAAGCCGCGCGCGAAGTTC
GTGCCGGCGACATGCTCCGTGTCAGGAATGAAGGCGGCGATTTCGAGGTGCTGGTACTGGGCGTCAGCGATATGCGCGGA
CCGGCGGCCTTGGCGCAACTGCTCTACCGGGAAACCGAAGCCAGCCGCGAGCTCCGCCTGAAACTCGCCGAGGAGCGCCG
CATGCAGCCCTCCTTCGAGAATACCCGCGAAGGCCGTCCTTCGAAACGCGACCGGCGCGTCATGGGCAGGCTGCGAGGAC
GCTCGTGA

Upstream 100 bases:

>100_bases
GGAGATTCAAACGGCAATTTAGCGGACGCTCCCTAACGGTCGCGGCTCGGAAGGAGAACGGCACAGGAGAACGGCGGGAG
GGGCGGGGCCTTGCTCGTTA

Downstream 100 bases:

>100_bases
TCGCGGAAGAGGCATTCGGCGAGCTCACGAAGACCACGCTCCTCATCGTGGGAGCCCTGTTCCCGATCGTGAATCCGATC
GGCAATACGCCGATCTTCCT

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MRIIVENSPMDGVRMDKWLWAARFFKTRSLASKACELGRIESNGQPAKAAREVRAGDMLRVRNEGGDFEVLVLGVSDMRG
PAALAQLLYRETEASRELRLKLAEERRMQPSFENTREGRPSKRDRRVMGRLRGRS

Sequences:

>Translated_135_residues
MRIIVENSPMDGVRMDKWLWAARFFKTRSLASKACELGRIESNGQPAKAAREVRAGDMLRVRNEGGDFEVLVLGVSDMRG
PAALAQLLYRETEASRELRLKLAEERRMQPSFENTREGRPSKRDRRVMGRLRGRS
>Mature_135_residues
MRIIVENSPMDGVRMDKWLWAARFFKTRSLASKACELGRIESNGQPAKAAREVRAGDMLRVRNEGGDFEVLVLGVSDMRG
PAALAQLLYRETEASRELRLKLAEERRMQPSFENTREGRPSKRDRRVMGRLRGRS

Specific function: May play a important role in binding of nucleic acid. More specific for RNA [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=128, Percent_Identity=38.28125, Blast_Score=87, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15463; Mature: 15463

Theoretical pI: Translated: 11.49; Mature: 11.49

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIVENSPMDGVRMDKWLWAARFFKTRSLASKACELGRIESNGQPAKAAREVRAGDMLR
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEE
VRNEGGDFEVLVLGVSDMRGPAALAQLLYRETEASRELRLKLAEERRMQPSFENTREGRP
EECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
SKRDRRVMGRLRGRS
CHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIIVENSPMDGVRMDKWLWAARFFKTRSLASKACELGRIESNGQPAKAAREVRAGDMLR
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEE
VRNEGGDFEVLVLGVSDMRGPAALAQLLYRETEASRELRLKLAEERRMQPSFENTREGRP
EECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
SKRDRRVMGRLRGRS
CHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]