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The map label for this gene is xerC [C]

Identifier: 116622414

GI number: 116622414

Start: 4188436

End: 4189674

Strand: Direct

Name: xerC [C]

Synonym: Acid_3310

Alternate gene names: 116622414

Gene position: 4188436-4189674 (Clockwise)

Preceding gene: 116622412

Following gene: 116622415

Centisome position: 42.03

GC content: 60.53

Gene sequence:

>1239_bases
GTGATAAACCAACTCTTCACCTTCTCAAGCACGATTGAACGGCTGCGCCAGGGGCCTTTGAATGAACACCTCGATGCCTA
TGCGGCCGCTGTTGCCGAACAGGGCTATACTCACGACTCGATCAGACAGCAGATCGTAGTAATTGCCGATTTCAGCCGCT
GGCTGGCACAGAAACACATCGATGTCCAGGCGCTGAACAGCCAGATTGTGGATCGGTACCTGCGACTTCGCCGTCGGCAG
CAGCGGATCCGCAGAGGCGAGCCAAAAACGCTGGTGCGACTGCTGGCGATGCTTGGCCAAAAAGGCGTTGTGAAACAACA
CCAGCAACCGGTCGCAGACAACGCCCGGACGAGGATCACCAACGAGTTCCGGTGCTACCTGTTGCAGGAACGCGGCCTGT
CCCCATCCACGCTGCTCCACTACGTGCCCGTCGCGGAGCAGTTCCTGGCCGAGCGATTTCACAACGCGGTTCCGAGCTTC
GCCATGATACGGGCAACCCACGTCACCGGATTTGTTCTGCGTCACGCACGTCAGTTAAGTCCTGTGCGGGCCGGGCTGAT
GGTAACGGCGCTTCGGTCGTTCTTTCGTTATCTGCGGCACCGCGGCGTAATCGCTACCGATCTTGCTGCTTGTGTCCCCA
CGGTCCCCAACTGGTCGCTTTCCACGCTTCCAAGGTTCTTGCCGGCTGCCGCGGTGGAACGTATTCTGGAGTGCTGCGAT
CGAACGACGTCCGTTGGCAGGCGGAACCATACCATCTTGTTGCTGCTCGCCAGGCTCGGCGTACGCGCCGGCGAAGTCGT
CGGTCTGAGCTTGGACGATATTGACTGGAGCACGGGCCAGATCACGATTCGCGGAAAGGGCGGGAAATCGGCCCAACTAC
CGCTGGTCAACGACGTAGGCTCCGCTCTTGCCGACTATTTGCGTCATGACCGCCCACGTTCGGCTACTCGCAGAGTGTTC
CTTCGCCACCGGGCGCCGTTAGTCGGCTTTGGGAACTCATCGACGATTTCCTCGCTGGTCAGGCGCGCTCTGAAACATGC
CGGCGTAGAGTCGGCGCACACCGGCGCCCATGTGCTTCGACATTCGCTAGCCACGAGCTTACTTCGGCAGGGTGGCTCGC
TGGATGAGATTGGCGAACTGCTGCGGCACCAGAGCCCCAACACGACGGCGATCTACGCCAAAGTAGACGTCACCGCCTTG
CACACCTTGGCGTTGCCGTGGCCGGGAGGTGGCCGATGA

Upstream 100 bases:

>100_bases
CCGGACTATGCCGCGTGTTGGCGTGCGAGCCGCGATTCATGGGCATTTAAACAGCTGCGACGCGGCATAGTTTTGGGCGC
GTGCTTGGCACTCTGGGAGA

Downstream 100 bases:

>100_bases
ATCCGCTGGCCAAAGGTATCCGTGACTACCTGGCTTTGCGTCGTGGCCTGGGGTTCAAGCTGGTTCGGCATGAGGCTGGG
CTGAAGGAGTTCGCGTCCTT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MINQLFTFSSTIERLRQGPLNEHLDAYAAAVAEQGYTHDSIRQQIVVIADFSRWLAQKHIDVQALNSQIVDRYLRLRRRQ
QRIRRGEPKTLVRLLAMLGQKGVVKQHQQPVADNARTRITNEFRCYLLQERGLSPSTLLHYVPVAEQFLAERFHNAVPSF
AMIRATHVTGFVLRHARQLSPVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPAAAVERILECCD
RTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVGSALADYLRHDRPRSATRRVF
LRHRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTAL
HTLALPWPGGGR

Sequences:

>Translated_412_residues
MINQLFTFSSTIERLRQGPLNEHLDAYAAAVAEQGYTHDSIRQQIVVIADFSRWLAQKHIDVQALNSQIVDRYLRLRRRQ
QRIRRGEPKTLVRLLAMLGQKGVVKQHQQPVADNARTRITNEFRCYLLQERGLSPSTLLHYVPVAEQFLAERFHNAVPSF
AMIRATHVTGFVLRHARQLSPVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPAAAVERILECCD
RTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVGSALADYLRHDRPRSATRRVF
LRHRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTAL
HTLALPWPGGGR
>Mature_412_residues
MINQLFTFSSTIERLRQGPLNEHLDAYAAAVAEQGYTHDSIRQQIVVIADFSRWLAQKHIDVQALNSQIVDRYLRLRRRQ
QRIRRGEPKTLVRLLAMLGQKGVVKQHQQPVADNARTRITNEFRCYLLQERGLSPSTLLHYVPVAEQFLAERFHNAVPSF
AMIRATHVTGFVLRHARQLSPVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPAAAVERILECCD
RTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVGSALADYLRHDRPRSATRRVF
LRHRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTAL
HTLALPWPGGGR

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=282, Percent_Identity=29.0780141843972, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789261, Length=227, Percent_Identity=30.3964757709251, Blast_Score=88, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45911; Mature: 45911

Theoretical pI: Translated: 11.61; Mature: 11.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINQLFTFSSTIERLRQGPLNEHLDAYAAAVAEQGYTHDSIRQQIVVIADFSRWLAQKHI
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEEEEHHHHHHHHHCC
DVQALNSQIVDRYLRLRRRQQRIRRGEPKTLVRLLAMLGQKGVVKQHQQPVADNARTRIT
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHH
NEFRCYLLQERGLSPSTLLHYVPVAEQFLAERFHNAVPSFAMIRATHVTGFVLRHARQLS
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
PVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPAAAVERILECCD
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVG
HHHHCCCCCCHHHHHHHHHCCCCCCEEECEECCCCCCCCEEEEEECCCCCCCCCCHHHHH
SALADYLRHDRPRSATRRVFLRHRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLR
HHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
HSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTALHTLALPWPGGGR
HHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEHHHHHHEECCCCCCCC
>Mature Secondary Structure
MINQLFTFSSTIERLRQGPLNEHLDAYAAAVAEQGYTHDSIRQQIVVIADFSRWLAQKHI
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEEEEHHHHHHHHHCC
DVQALNSQIVDRYLRLRRRQQRIRRGEPKTLVRLLAMLGQKGVVKQHQQPVADNARTRIT
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHH
NEFRCYLLQERGLSPSTLLHYVPVAEQFLAERFHNAVPSFAMIRATHVTGFVLRHARQLS
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
PVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPAAAVERILECCD
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVG
HHHHCCCCCCHHHHHHHHHCCCCCCEEECEECCCCCCCCEEEEEECCCCCCCCCCHHHHH
SALADYLRHDRPRSATRRVFLRHRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLR
HHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
HSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTALHTLALPWPGGGR
HHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]