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The map label for this gene is yqhC [H]

Identifier: 116622412

GI number: 116622412

Start: 4185440

End: 4186390

Strand: Direct

Name: yqhC [H]

Synonym: Acid_3307

Alternate gene names: 116622412

Gene position: 4185440-4186390 (Clockwise)

Preceding gene: 116622405

Following gene: 116622414

Centisome position: 42.0

GC content: 57.2

Gene sequence:

>951_bases
ATGGCAAGACCAAAACAACAAGAACCAGACCGAAATCCGGCATTGATCGAGCTCAGAAGAGTGCTGGCCGCGAGGATTGC
CGGGCACGCAGTATCGGGGGGAGAACATTCCACATCGGTGCCCGGACTAACGCTATACCGTCGGATCTCTCCGAGCCCTT
GCCATCGAGGCAGCTACGAACCAAGTCTCAACGTGTTCGCCCAAGGTCGCAAGCGGATCAATTTGGGAGGTACCGAATAT
TTGTGCGACGGATCTTCGTTTCTGGTTTCATCAATCGACATTCCTGTTCAAAGCCAGATCGTCGAGGCATCCGAAGACGT
GCCGCTTCTTTCGATGCTTCTCCGGTTGGACATGGCGATGGTAGGAGAGGTGCTGAGCCGGGAGGACCTGCCGGAGCCCC
AAGGATCTTCGCATCATCACGGGCTGGCAGTTGGTGCTACAACGACTGGACTGCTAGGTGCCTGCATCAGACTGATGGAG
ACCCTCGATACGCCCGAGGACATTCCGTTTTTGAGCCCACTGATTCAGCGCGAAATCATCTATCGCGTGCTCAGAACTGA
GCAAGGCCAGCGGCTCCGTGCGATAGCGACGAGAGGCGATCTAAGCCATAGAACCGCGAAAGCAATTGCCTGGCTAAAGG
CCAACTACACCAAGCCGCTACGCATGGAGGAACTGGCCGAAGTCTCACGAATGGGTGTTTCGACACTGCACCATCAGTTT
CGGGCGCTAACCGCCATGAGCCCGCTCCAATACCAGAAGCAACTCAGGCTTCAGGCAGCAAGGCAACGGATGCTGACGGA
AGGAATCGATGCGACCAGGGCCGCATACGACGTCGGTTATGAGAGTGTAAGCCAATTCAGCCGCGAATACAGCCGCTTTT
TCGGCCAGCCTCCCATGCGCGACATCAGGGCGCTGCGAGACAGCAGCCTCTCGGCGACCACGGCCGCCTGA

Upstream 100 bases:

>100_bases
TTTCCCGATCCTGCCGATTCTTTGCCTGATCCTGTTTAGTGTGTGGCTTTTGTGAACCTGATCGCCCTCGCTGCGGTACG
CTGAAGACAAGCGGGCACGA

Downstream 100 bases:

>100_bases
CGCGCGGTGCGCTCAGCCTTGCGTGTGGTCGGATCGGCAAGGCGGAACAAAAACATGAGCGTGTAGTCATCTCGTCGATC
TGCCAGCGAGGTCCAGTCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MARPKQQEPDRNPALIELRRVLAARIAGHAVSGGEHSTSVPGLTLYRRISPSPCHRGSYEPSLNVFAQGRKRINLGGTEY
LCDGSSFLVSSIDIPVQSQIVEASEDVPLLSMLLRLDMAMVGEVLSREDLPEPQGSSHHHGLAVGATTTGLLGACIRLME
TLDTPEDIPFLSPLIQREIIYRVLRTEQGQRLRAIATRGDLSHRTAKAIAWLKANYTKPLRMEELAEVSRMGVSTLHHQF
RALTAMSPLQYQKQLRLQAARQRMLTEGIDATRAAYDVGYESVSQFSREYSRFFGQPPMRDIRALRDSSLSATTAA

Sequences:

>Translated_316_residues
MARPKQQEPDRNPALIELRRVLAARIAGHAVSGGEHSTSVPGLTLYRRISPSPCHRGSYEPSLNVFAQGRKRINLGGTEY
LCDGSSFLVSSIDIPVQSQIVEASEDVPLLSMLLRLDMAMVGEVLSREDLPEPQGSSHHHGLAVGATTTGLLGACIRLME
TLDTPEDIPFLSPLIQREIIYRVLRTEQGQRLRAIATRGDLSHRTAKAIAWLKANYTKPLRMEELAEVSRMGVSTLHHQF
RALTAMSPLQYQKQLRLQAARQRMLTEGIDATRAAYDVGYESVSQFSREYSRFFGQPPMRDIRALRDSSLSATTAA
>Mature_315_residues
ARPKQQEPDRNPALIELRRVLAARIAGHAVSGGEHSTSVPGLTLYRRISPSPCHRGSYEPSLNVFAQGRKRINLGGTEYL
CDGSSFLVSSIDIPVQSQIVEASEDVPLLSMLLRLDMAMVGEVLSREDLPEPQGSSHHHGLAVGATTTGLLGACIRLMET
LDTPEDIPFLSPLIQREIIYRVLRTEQGQRLRAIATRGDLSHRTAKAIAWLKANYTKPLRMEELAEVSRMGVSTLHHQFR
ALTAMSPLQYQKQLRLQAARQRMLTEGIDATRAAYDVGYESVSQFSREYSRFFGQPPMRDIRALRDSSLSATTAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=295, Percent_Identity=31.864406779661, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35047; Mature: 34915

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPKQQEPDRNPALIELRRVLAARIAGHAVSGGEHSTSVPGLTLYRRISPSPCHRGSYE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
PSLNVFAQGRKRINLGGTEYLCDGSSFLVSSIDIPVQSQIVEASEDVPLLSMLLRLDMAM
CCHHHHHCCCCEECCCCCEEEECCCHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
VGEVLSREDLPEPQGSSHHHGLAVGATTTGLLGACIRLMETLDTPEDIPFLSPLIQREII
HHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YRVLRTEQGQRLRAIATRGDLSHRTAKAIAWLKANYTKPLRMEELAEVSRMGVSTLHHQF
HHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
RALTAMSPLQYQKQLRLQAARQRMLTEGIDATRAAYDVGYESVSQFSREYSRFFGQPPMR
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHH
DIRALRDSSLSATTAA
HHHHHHHCCCCHHCCC
>Mature Secondary Structure 
ARPKQQEPDRNPALIELRRVLAARIAGHAVSGGEHSTSVPGLTLYRRISPSPCHRGSYE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
PSLNVFAQGRKRINLGGTEYLCDGSSFLVSSIDIPVQSQIVEASEDVPLLSMLLRLDMAM
CCHHHHHCCCCEECCCCCEEEECCCHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
VGEVLSREDLPEPQGSSHHHGLAVGATTTGLLGACIRLMETLDTPEDIPFLSPLIQREII
HHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YRVLRTEQGQRLRAIATRGDLSHRTAKAIAWLKANYTKPLRMEELAEVSRMGVSTLHHQF
HHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
RALTAMSPLQYQKQLRLQAARQRMLTEGIDATRAAYDVGYESVSQFSREYSRFFGQPPMR
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHH
DIRALRDSSLSATTAA
HHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]